| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0050 |
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| Symbol | |
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| ID | 6114271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 59053 |
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| End bp | 61485 |
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| Gene Length | 2433 bp |
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| Protein Length | 810 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641631529 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001758446 |
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| Protein GI | 170724420 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.237311 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCGG ACTATTTTTA TGAGCGCAGT GAGAAACGGG AGGAGGCGAT CTCCACTGAA
GTTGCTCATA TCGAGCAGCA CCTGATTAGA ATGCAGCACA TTGTTGAGTC TGCACTTTCT
ATGCAGGATT CAGCAAGAAT AGAGCAGGAG ATCTCTTTAG CGGCAGCAGA TTTGAGTATC
ATGGTTTATA CGGTACTAAA CAGTAAAAGC GTGATACGTT TTGCTAATCA TCTAGTATGG
CGAGACAGTT TAGCGACTCA AGTTATCGAT GGTTATGATC TGGAGCTTCA TCGTCGTACG
ACTAAGGAGA GCGCTCCGAC AACCTTCGTT AACTCAGAGC GGTTGTCGAT ACAGACTTAT
TATCCTCTGC ACACTAACTT TCAAAATGAT AAAGCAGATC TCCATGATCT TATCTATATG
GAGTATGACA TCTCCCCTTT GATAAATAAG GTAGATAATG ATGTGCAATC TAGCTTTATA
CGATCAGTCG CTGTGAGTCT GATCGGTATC TTGTTATTCC TGCTTCTTAT GCATATCTAT
CTGATACGCC CCTTGAGAAC TTTGGGGCTG AAAGCAAGTA GTTCGGCTCA GTTGCCTAAT
GGCTTAGGTT CAAACGATAA ACCTGTTACT GCGATATTTA GTGAAGTGGT GGCGATTCAA
GAGCACCTTA GAGATTTTTC AGAGAAATTA AGCCACAGCA AAAAACAGCT TAATGATAGC
CAGAAGAGGT GGCTGTTTGC CGTTGAAATT TCGAAAAACG GTATTTGGGA CTGGAACTTA
AAGAGTAATG AAGTGTTTCT TTCTGATCGG TGGAAAGAGA TGCTTGGATA TGAAGTCGAT
GAGTTAAAGC ATGAGTTGAA TACCTGGCAG GAACTGCTGC ACCCAGAAGA TAAGATAGAA
GCACTAAAGC TGTTAAATCA ATATCTCAAT AATGAGATGG AGGAGTTTGA GAGCGTACAT
AGGCTTAGGC ATAAGGAAGG GCATTATATC TGGGTATTGG ACAGGGGAAT GGTTGTTGAT
TGGGATGAAA CTGGAGCACC AGTTCGGATG ATCGGTACTC ACACTGATGT TTCTGATGAT
GTGAGAAATC AACAAGCGAT TATTCACCAA ACTAAGCATG ATATTTTAAC TGGCTTGGCA
AATCGAAGTG CCCTACTTGA TGAGCTTTAT GCGCTTAAGG TTCAGCAACA AGGTGATTTC
GCGGCACTGT TTGTGATCGA TCTTGATAAT TTTAAGATGA TTAACGATGC CCTAGGTCAT
CACAGAGGTG ACAGGATTCT AATTAAGGTG GCGGCGCGTT TATCGAGCCA TTTTTCTACT
AATGTTTTGA TCGCTCGTTT AGGCTCTGAT GAGTTTGTTT TATTAGTTAA GTCATTAGGA
GATGATCTGA CTAGCGTAAA CAGACGTACA GTCGCTTTGG CTAGTCAGAT CCGTCAGATG
GTGGGTAGAA GTTTTCATAT TACTAACCAG ACAATAAACA TCTCTGCCAG TGTTGGGATA
TGTGTTCTTA ATGATCTTGC CAATATGGAG CCGGAGCAGA TGCTGCAACA TGCTGATCTT
GCAATGCATC AGGCAAAAGA GAAGGGGCGA GATGCCCATG CAATCTATAA CACTGAAATG
GAGGAGATTG TGCAAAAGAG TTTGTGGATC AGCAGCGAGT TAAAACGTGC AATCGTAAAA
GAACAGCTCT CTTTAGTATT CCAGCCGATC CTTGATAGAG ATGGTGAAAT TGTGTGTGCT
GAAGTGTTAT TGCGTTGGAC ACACCCCGAG AAAGGCCCTA TTTCACCAGC TGAGTTCATC
CCCGTTGCTG AGGGGAGCGG TCTGATTCAA GAGATAGGGT ATTGGGTGCT AAAGGAGACC
TGTTACTTTA TCAATAGACT GAAAGCGCGA GGCATTGTTT TATCTTCAGT AGCCATAAAT
GTCAGTGCAA GACAGTTCAA TCAAGATCTC TTTGTTGAAA ATCTACTTAC TGAGATCATG
GAGCAGGGTC TTGCAGCCGA TACCATTGAG CTTGAGTTGA CCGAATATGC TTTATTGACC
AATCTGGATA TCATCAAGCA GAGGATGCAT GTGTTGAAAG AGTCAGGGAT CTCAATTGCA
ATTGATGACT TTGGTACAGG TTACAGTTCG TTAAGTTATC TGCAAACTCT ACCTCTATCT
AGACTTAAAT TGGATGCGGC TTTTGTGAGT AAAATAGGCG AGAACGATGC CTCTAATGCT
ATCGTTAAAG CTATCATCAA TATGGCTCAC AGCTTAAACC TCAAGGTTGT GGCTGAAGGG
GTTGAAACGC AGGAGCAACA TCAGTTTTTG CGAGATCATG ATTGCGACAC ATTTCAAGGC
TATCTGTTCA GTCGCCCCTT AGATGAAGAG GCGTTTATTC AATCTCTACT TAAACCAAAT
ACAATTCAAG ATGGCAAGTT AACCTGCTTA TAA
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| Protein sequence | MTADYFYERS EKREEAISTE VAHIEQHLIR MQHIVESALS MQDSARIEQE ISLAAADLSI
MVYTVLNSKS VIRFANHLVW RDSLATQVID GYDLELHRRT TKESAPTTFV NSERLSIQTY
YPLHTNFQND KADLHDLIYM EYDISPLINK VDNDVQSSFI RSVAVSLIGI LLFLLLMHIY
LIRPLRTLGL KASSSAQLPN GLGSNDKPVT AIFSEVVAIQ EHLRDFSEKL SHSKKQLNDS
QKRWLFAVEI SKNGIWDWNL KSNEVFLSDR WKEMLGYEVD ELKHELNTWQ ELLHPEDKIE
ALKLLNQYLN NEMEEFESVH RLRHKEGHYI WVLDRGMVVD WDETGAPVRM IGTHTDVSDD
VRNQQAIIHQ TKHDILTGLA NRSALLDELY ALKVQQQGDF AALFVIDLDN FKMINDALGH
HRGDRILIKV AARLSSHFST NVLIARLGSD EFVLLVKSLG DDLTSVNRRT VALASQIRQM
VGRSFHITNQ TINISASVGI CVLNDLANME PEQMLQHADL AMHQAKEKGR DAHAIYNTEM
EEIVQKSLWI SSELKRAIVK EQLSLVFQPI LDRDGEIVCA EVLLRWTHPE KGPISPAEFI
PVAEGSGLIQ EIGYWVLKET CYFINRLKAR GIVLSSVAIN VSARQFNQDL FVENLLTEIM
EQGLAADTIE LELTEYALLT NLDIIKQRMH VLKESGISIA IDDFGTGYSS LSYLQTLPLS
RLKLDAAFVS KIGENDASNA IVKAIINMAH SLNLKVVAEG VETQEQHQFL RDHDCDTFQG
YLFSRPLDEE AFIQSLLKPN TIQDGKLTCL
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