Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0042 |
Symbol | |
ID | 6114259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 46211 |
End bp | 47974 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 641631517 |
Product | collagenase |
Protein accession | YP_001758438 |
Protein GI | 170724412 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.53761 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.627345 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCGCC AATCAGTTAT TGCTCTTGCG CTTCTTTCAC TCTCTGGCTG CAGCTCAACT GCAAAGATAA GTTTAGATAA CACACAGATA AACAAGATCA TGGAAGCTCA AGAGCAATCT CTATTTAAAG CAGATAGTCC ACTGTTAACT AAAGATATAT TTATACAGGT AAGTTTAGCA TTAGCGAGTG TTAACGATGA GCAACAAGCA GATAAGCTCC TCTATTACCT CCGTGCTTTT AGTTATTTTG GCCCTAAAGA ACTACTCGAC AGTTCCAGCA TTGAAGCCCT CACTCTTGGC CTATCTGAAC TCACAAATAA ACCATTTTTT TCTCGTTCCC CTCGCCTACA GGAGCATTTT GCTGTGACGA TTTATCGCTA CTACAGTGAT AATGACAACG CGCAGCAACT CGCAAAGCTT CTACCCATGC TTGAGGCTCA ACTTATTTCA CTGGGTGAAA GCAATACTAA CTTAGCTAAC GACTACGGAC TTTGGGAAAC ACTCAGGGCC TACGGCATGT TATTTAACAG TGCAAGAAAG GATGTAGACG GAGAGTTGAA TCAACAAATT GTCGCTTTAG ATCTGGCCAA GCCATTATTA GACTTTGCCT CTTCAAATAC CAGCATCAGA GAGGGTAACG ACTGGCCAAA GGCAAACGCA TACTGGGCAC TTGGCCTCTA TCGCCTAGCC CTACCAACTA GCGACGAGAA TAAACCCACA TTAGCTGAAG ATAGAATAGA TAAAGCAGTT GCTGAGATCG CCAAAGTAGA TATCTCAATA AGAGGGGATG ATGCCAAAGA CACATACACC TTAGGGTTTC ATGTAAATGC CTTTGCAGGA AAAGATCGTT GTGAACAGAA CAGTGATATC TGCCGCATCC CAGAACTAAC CGACATTTTA CCCATACATC ACCCCTGCTC CGACAGCTTG TTTATCTTGG CCCAAGATCT GAATCAAGAG GAGCTGGCAA GCAGCTGCAC CAAATTGACC TCACAAGAAG CAAACTTCCA CCAGATACTC GAGACAGGGC ATCAAGCAAC GCCAAATGAT TTTAATACAG CGCTTAGAGT CGTTGCCTTT AAAAACTGGA GCCAATATAA CGCTTATGGT CAGCTACTAT TTGATATCAA TACCGACAAT GGTGGTATGT ATATCGAAGG CACTCCCTCT AAGCCTGGAA ACCAAGCCAC CTTCTTTGCC TATCGCCAAT TTTGGATCCA ACCAGAGTTT GCAATTTGGA ACTTAAATCA TGAATACGTT CATTACCTAG ATGGTCACTT TGTAAAATAT GGAGGCTTCG GTCATTTCCC ATCTAAAATG GTCTGGTGGT CTGAAGGGTT AGCGGAATAT ATCGCTAAAG GTGATTCCAA CCCAAACACA CTAAAAGTCA TCAAACGTGA TATAGAAAAA GCGCCGACTC TTGAGGAGAT TTTTGCCACA GAATATGATG ATGGCCAAGA CAGGACCTAT AAGTGGAGCT ATATGGCGGT TCGCTTTCTC GCTGAGCACC ACCACAGTGA TTTTGTTCAG CTAAGTCAAT TCCTGAAAAC CGACTACTTT GAGGGCTATG AACAACTGCT GCAGTCACTC ACTCAATATC AGCCAGAGTT CTCTAACTGG CTTAACACTC AAGTTAACCA ATTTGATGAT AACCAAGATA AGAATAAGGT TAAGGTTAAG ATCAATAAAC TAAACCGTTA CAGCTATCGG GAATACTTAA AACCAACTCA CTTAGTACAG GATAAGAAAC ACCTGCACTA TTAA
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Protein sequence | MFRQSVIALA LLSLSGCSST AKISLDNTQI NKIMEAQEQS LFKADSPLLT KDIFIQVSLA LASVNDEQQA DKLLYYLRAF SYFGPKELLD SSSIEALTLG LSELTNKPFF SRSPRLQEHF AVTIYRYYSD NDNAQQLAKL LPMLEAQLIS LGESNTNLAN DYGLWETLRA YGMLFNSARK DVDGELNQQI VALDLAKPLL DFASSNTSIR EGNDWPKANA YWALGLYRLA LPTSDENKPT LAEDRIDKAV AEIAKVDISI RGDDAKDTYT LGFHVNAFAG KDRCEQNSDI CRIPELTDIL PIHHPCSDSL FILAQDLNQE ELASSCTKLT SQEANFHQIL ETGHQATPND FNTALRVVAF KNWSQYNAYG QLLFDINTDN GGMYIEGTPS KPGNQATFFA YRQFWIQPEF AIWNLNHEYV HYLDGHFVKY GGFGHFPSKM VWWSEGLAEY IAKGDSNPNT LKVIKRDIEK APTLEEIFAT EYDDGQDRTY KWSYMAVRFL AEHHHSDFVQ LSQFLKTDYF EGYEQLLQSL TQYQPEFSNW LNTQVNQFDD NQDKNKVKVK INKLNRYSYR EYLKPTHLVQ DKKHLHY
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