Gene Swoo_0042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0042 
Symbol 
ID6114259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp46211 
End bp47974 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content42% 
IMG OID641631517 
Productcollagenase 
Protein accessionYP_001758438 
Protein GI170724412 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.53761 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.627345 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCGCC AATCAGTTAT TGCTCTTGCG CTTCTTTCAC TCTCTGGCTG CAGCTCAACT 
GCAAAGATAA GTTTAGATAA CACACAGATA AACAAGATCA TGGAAGCTCA AGAGCAATCT
CTATTTAAAG CAGATAGTCC ACTGTTAACT AAAGATATAT TTATACAGGT AAGTTTAGCA
TTAGCGAGTG TTAACGATGA GCAACAAGCA GATAAGCTCC TCTATTACCT CCGTGCTTTT
AGTTATTTTG GCCCTAAAGA ACTACTCGAC AGTTCCAGCA TTGAAGCCCT CACTCTTGGC
CTATCTGAAC TCACAAATAA ACCATTTTTT TCTCGTTCCC CTCGCCTACA GGAGCATTTT
GCTGTGACGA TTTATCGCTA CTACAGTGAT AATGACAACG CGCAGCAACT CGCAAAGCTT
CTACCCATGC TTGAGGCTCA ACTTATTTCA CTGGGTGAAA GCAATACTAA CTTAGCTAAC
GACTACGGAC TTTGGGAAAC ACTCAGGGCC TACGGCATGT TATTTAACAG TGCAAGAAAG
GATGTAGACG GAGAGTTGAA TCAACAAATT GTCGCTTTAG ATCTGGCCAA GCCATTATTA
GACTTTGCCT CTTCAAATAC CAGCATCAGA GAGGGTAACG ACTGGCCAAA GGCAAACGCA
TACTGGGCAC TTGGCCTCTA TCGCCTAGCC CTACCAACTA GCGACGAGAA TAAACCCACA
TTAGCTGAAG ATAGAATAGA TAAAGCAGTT GCTGAGATCG CCAAAGTAGA TATCTCAATA
AGAGGGGATG ATGCCAAAGA CACATACACC TTAGGGTTTC ATGTAAATGC CTTTGCAGGA
AAAGATCGTT GTGAACAGAA CAGTGATATC TGCCGCATCC CAGAACTAAC CGACATTTTA
CCCATACATC ACCCCTGCTC CGACAGCTTG TTTATCTTGG CCCAAGATCT GAATCAAGAG
GAGCTGGCAA GCAGCTGCAC CAAATTGACC TCACAAGAAG CAAACTTCCA CCAGATACTC
GAGACAGGGC ATCAAGCAAC GCCAAATGAT TTTAATACAG CGCTTAGAGT CGTTGCCTTT
AAAAACTGGA GCCAATATAA CGCTTATGGT CAGCTACTAT TTGATATCAA TACCGACAAT
GGTGGTATGT ATATCGAAGG CACTCCCTCT AAGCCTGGAA ACCAAGCCAC CTTCTTTGCC
TATCGCCAAT TTTGGATCCA ACCAGAGTTT GCAATTTGGA ACTTAAATCA TGAATACGTT
CATTACCTAG ATGGTCACTT TGTAAAATAT GGAGGCTTCG GTCATTTCCC ATCTAAAATG
GTCTGGTGGT CTGAAGGGTT AGCGGAATAT ATCGCTAAAG GTGATTCCAA CCCAAACACA
CTAAAAGTCA TCAAACGTGA TATAGAAAAA GCGCCGACTC TTGAGGAGAT TTTTGCCACA
GAATATGATG ATGGCCAAGA CAGGACCTAT AAGTGGAGCT ATATGGCGGT TCGCTTTCTC
GCTGAGCACC ACCACAGTGA TTTTGTTCAG CTAAGTCAAT TCCTGAAAAC CGACTACTTT
GAGGGCTATG AACAACTGCT GCAGTCACTC ACTCAATATC AGCCAGAGTT CTCTAACTGG
CTTAACACTC AAGTTAACCA ATTTGATGAT AACCAAGATA AGAATAAGGT TAAGGTTAAG
ATCAATAAAC TAAACCGTTA CAGCTATCGG GAATACTTAA AACCAACTCA CTTAGTACAG
GATAAGAAAC ACCTGCACTA TTAA
 
Protein sequence
MFRQSVIALA LLSLSGCSST AKISLDNTQI NKIMEAQEQS LFKADSPLLT KDIFIQVSLA 
LASVNDEQQA DKLLYYLRAF SYFGPKELLD SSSIEALTLG LSELTNKPFF SRSPRLQEHF
AVTIYRYYSD NDNAQQLAKL LPMLEAQLIS LGESNTNLAN DYGLWETLRA YGMLFNSARK
DVDGELNQQI VALDLAKPLL DFASSNTSIR EGNDWPKANA YWALGLYRLA LPTSDENKPT
LAEDRIDKAV AEIAKVDISI RGDDAKDTYT LGFHVNAFAG KDRCEQNSDI CRIPELTDIL
PIHHPCSDSL FILAQDLNQE ELASSCTKLT SQEANFHQIL ETGHQATPND FNTALRVVAF
KNWSQYNAYG QLLFDINTDN GGMYIEGTPS KPGNQATFFA YRQFWIQPEF AIWNLNHEYV
HYLDGHFVKY GGFGHFPSKM VWWSEGLAEY IAKGDSNPNT LKVIKRDIEK APTLEEIFAT
EYDDGQDRTY KWSYMAVRFL AEHHHSDFVQ LSQFLKTDYF EGYEQLLQSL TQYQPEFSNW
LNTQVNQFDD NQDKNKVKVK INKLNRYSYR EYLKPTHLVQ DKKHLHY