| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0039 |
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| Symbol | |
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| ID | 6114256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 43301 |
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| End bp | 44410 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641631514 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001758435 |
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| Protein GI | 170724409 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.357546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAACC CCATGAAACG ACTAATTTTA TTCGCTTTAA TGACATTTAG TTGCTCTATA
TTCGCAGATA CCCTCACTTT GAAGTCCGGT CATCCAGATT CCTATGTTGT TGTGAAGGGA
GACACACTCT GGGATATCTC TGAACATTTT CTTAATGACC CTTGGCGCTG GCCTAAGTTA
TGGGGCGTTA ATCCTCAAAT TGCGAACCCT CACCTCATCT ATCCAGGTGA TCGGCTGACT
TTAGTTTTCA TTGATGGCGA ACCTAGATTA GTCGTTAAGC CCCATAAGCG TAAGAGCCCT
GAAGGCAGAA TTCATGCTAA GGGCGATGCG ATACCAGCGA TTGATCTTTC GTTAATTGGT
CCCTACTTAA TTCAAAATCG TGTTGTCGAT GGTGATTGGT TTGATAAACA ACCTATGGTG
CTGGGTGGGG AGAGCGAATC TAAACATCAT ATCGTTGGCG ATATTGTTTA TGTACAACAA
GTTCTGACCT TAGGTGATAA GTTTGGTGTT TATTCTGAAG GTCGTGAGTT TGTCAGTAAA
GAGAATGAAG TGCTTGGGAA AGAGGTGGTT TTAACTGCCA GTGGACGTGT GGTTGAGTCT
GGCCCTATCT CTAAGATTAA GCTACTGAGC AACTTTCGTG AAACTAAAGC GGGATACCGT
ATTTTACCCA TCGAGAGTGA TTCACTGCTC TCCGCTTACT TTATGCCCAA AGCTGCGACA
GTGACTGAGC CTGGCTCAAT CCTCGCCTCT GAAAAGCACC TAAGAGAGAT GGGTAAACTG
GATGTGGTCT ATCTTGATAA AGGGGTAGAG GATGGGGTTG AACCTGGTGA TGTTTTCTCA
ATCTATCGAG ATGGCATCGA TGTGGTGATA AATGGTGATG GACAGCCTGT ACTGCCTGCA
GAAAGAAGTA GTTATGAAGA TCTGCTAAGT GGTGTTTCCT CCGATAATGC CATTAAGATG
CCTGATATCT TCCGTGGTCG ATTAATGGTG TTTAAAGTTT TTGATAAGAC CAGCCTTGGT
CTTATCATGG CGAATAAGAA AACTGTCCGG GTCGATGATA AGTTGGTCCA GCCAGATTCG
ATAAACCTAT TAAAAAGTTT TGCTGATTAA
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| Protein sequence | MENPMKRLIL FALMTFSCSI FADTLTLKSG HPDSYVVVKG DTLWDISEHF LNDPWRWPKL
WGVNPQIANP HLIYPGDRLT LVFIDGEPRL VVKPHKRKSP EGRIHAKGDA IPAIDLSLIG
PYLIQNRVVD GDWFDKQPMV LGGESESKHH IVGDIVYVQQ VLTLGDKFGV YSEGREFVSK
ENEVLGKEVV LTASGRVVES GPISKIKLLS NFRETKAGYR ILPIESDSLL SAYFMPKAAT
VTEPGSILAS EKHLREMGKL DVVYLDKGVE DGVEPGDVFS IYRDGIDVVI NGDGQPVLPA
ERSSYEDLLS GVSSDNAIKM PDIFRGRLMV FKVFDKTSLG LIMANKKTVR VDDKLVQPDS
INLLKSFAD
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