Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0038 |
Symbol | def |
ID | 6114255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 42609 |
End bp | 43118 |
Gene Length | 510 bp |
Protein Length | 169 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641631513 |
Product | peptide deformylase |
Protein accession | YP_001758434 |
Protein GI | 170724408 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.346284 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTAT TAAAAGTTTT ACGTTTTCCA GATGAGAAAT TACGCACGAT TGCCAAGCCA GTAACAGAGT TTAATGCTGA CTTACAAACG CAGATCGATA ACATGTTTGA AACCATGTAC GAAGAGAAAG GTATCGGGCT GGCAGCCACA CAAGTGGATT ACCATCACCA GCTGATAGTC ATGGATCTTC AAGATGAAGT GGAAAGACCA AAAGTCTTCA TTAATTTGGA GATAGTTGCT AGCAGCGGCC ACTTCGAAAA TGAAGAGGGC TGCCTCTCCG TTCCAGGCAT CTTCGCCAAT GTTGAGCGCG CCGAGCATGT CACCATCAAA GCACTAGATC GCGAAGGTAA TGAGTTTACC TTAGAGGCGG ATGGTCTATT TGGGATCTGC TTACAGCACG AATTAGATCA CCTTAAAGGT AAATTGTTTG TCGATTACCT ATCGCCACTA AAGCGTCAAC GAATCAAGCA GAAGCTTGAG AAAGCTGCCC GCCAAGAAAA GAAAGGATAG
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Protein sequence | MSLLKVLRFP DEKLRTIAKP VTEFNADLQT QIDNMFETMY EEKGIGLAAT QVDYHHQLIV MDLQDEVERP KVFINLEIVA SSGHFENEEG CLSVPGIFAN VERAEHVTIK ALDREGNEFT LEADGLFGIC LQHELDHLKG KLFVDYLSPL KRQRIKQKLE KAARQEKKG
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