Gene Swoo_0023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0023 
Symbol 
ID6114240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand+ 
Start bp30153 
End bp30788 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content46% 
IMG OID641631498 
Producthypothetical protein 
Protein accessionYP_001758419 
Protein GI170724393 
COG category[S] Function unknown 
COG ID[COG1739] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00257] uncharacterized protein, YigZ family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.815325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.000952494 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGACTGACA GTTATCGGAT CCCGTCGGCT GAATTGATCA TAGAAGAGGA GATAAAGCAT 
AGTCGCTTTA TCTCTTTTCT TTTTCACTGC CAGTCTTACG AAGAGCTGAA GTGTGCACTT 
ACTAACATAA AGGCAGATTA CCCAGGAGCT AACCATTATT GCTATGCTTT TGTCGCTGCA 
GAGCCTGGCA ATACCCTTGC TATGGGCTCC AGTGATGATG GTGAGCCATC AGGCAGTGCT 
GGTCGTCCTA TGTTGGCCAC TTTGCAGGGC GCTGATGTGG GCGAGATAGG CGCCGTTGTG 
GTGCGCTATT TTGGTGGCAC TAAGTTAGGT GTTGGTGGGC TAGTGAGAGC ATACAGTTCA 
GGGATAAAAC AGGGGCTGAC TCAGTTAGAA ACTCAGCTAA AACAGATCCG TTATCCCGGT 
TTACTGGTAT GTGATTATAA TCAGCTTAAA GATGTTGAGT ATCTATTAGC GCAATATGAT 
GGAGTGATAG AGGAGCGGGA CTTTATGGAA AAGGTTACCC TCAACTTTGC GATCCCTAAG 
CGGTTTCAAA CTGAATTAAA CCGCGATCTG GCTACCATGA GCCAAGGGCT TTTAGCGGCT 
AAGTTTGATT TTCACAAGAG TGATTCAACC CATTAA
 
Protein sequence
MTDSYRIPSA ELIIEEEIKH SRFISFLFHC QSYEELKCAL TNIKADYPGA NHYCYAFVAA 
EPGNTLAMGS SDDGEPSGSA GRPMLATLQG ADVGEIGAVV VRYFGGTKLG VGGLVRAYSS 
GIKQGLTQLE TQLKQIRYPG LLVCDYNQLK DVEYLLAQYD GVIEERDFME KVTLNFAIPK 
RFQTELNRDL ATMSQGLLAA KFDFHKSDST H