| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0020 |
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| Symbol | fadA |
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| ID | 6114237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 25234 |
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| End bp | 26397 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641631495 |
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| Product | 3-ketoacyl-CoA thiolase |
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| Protein accession | YP_001758416 |
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| Protein GI | 170724390 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000295013 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAACAAG CAGTTATCGT AGATTGCATC CGTACTCCCA TGGGCCGTTC TAAGGCTGGA
GTATTTAGAA ATGTACGTGC AGAGACACTC TCTGCAGAGT TAATGAAAGC CCTCTTGGCT
CGCAATCCAA AACTTGATCC AAAAGACATC GAAGATGTAA TTTGGGGCTG TGTACAGCAA
ACCTTAGAGC AAGGTTTCAA TATCGCTCGT AATGCCGCTC TACTTGCTGG CATTCCGAAA
GAGGCTGGTG CAGTTACCGT AAACCGCCTA TGTGGCTCAT CTATGGATGC CCTACATCAA
GCGGCGCGTG CCATCATGAC AGGCCAAGGT GATACTTTCA TTATTGGCGG TGTCGAGCAC
ATGGGTCACG TCCCGATGAA CCACGGTGTC GATTTCCACC CAGGTCTTGC CAACAATGTT
GCAAAAGCTT CAGGCATGAT GGGTCTTACT GCAGAGATGC TAGGTAAGAT GCATGGCATA
AGCCGTGAGC AGCAAGATGA GTTTGCAGTA CGTTCTCATC AACGTGCTCA CGCAGCAACA
GTTGAGGGTC GCTTTGCTAA TGAGATCCAC CCAGTCGAAG GTCATGATGC TAACGGCGTG
TTGATCAAGG TTGAGCATGA CGAAGTGATC CGTCCTGAGA CCTCAATGGA ATCACTGTCG
GGTCTTCGCC CAGCTTTTGA TCCAGCAAAC GGCACAGTAA CCGCAGGCAC CTCATCGGCT
CTCTCTGATG GCGCATCAGC CATGCTAGTT ATGGAAGAGG AGAAAGCCAA AGCGTTAGGC
CTACCTATTC GTGCACGCAT TCGTTCTATG GCTGTGGCAG GTTGTGATGC CGCAATCATG
GGTTACGGCC CAGTACCTGC AACCAAAAAA GCACTTGAGC GTGCAGGCCT AACAATTGAT
GATCTCGATG TTATCGAGCT TAACGAAGCC TTCGCCGCTC AGTCTCTACC CTGTGTTAAA
GATCTTGGTT TGATGGATGT AGTTGATGAG AAGATTAACC TTAACGGCGG CGCTATTGCA
CTGGGTCATC CGCTGGGTTG TTCTGGCGCT CGTATCTCGA CAACATTGAT CAACCTAATG
GAAGCGAAAG ATGCAAAATA TGGTTTAGCG ACCATGTGTA TCGGCCTAGG ACAAGGTATC
GCAACGGTAT TTGAGCGCCC ATAA
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| Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKALLA RNPKLDPKDI EDVIWGCVQQ
TLEQGFNIAR NAALLAGIPK EAGAVTVNRL CGSSMDALHQ AARAIMTGQG DTFIIGGVEH
MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKMHGI SREQQDEFAV RSHQRAHAAT
VEGRFANEIH PVEGHDANGV LIKVEHDEVI RPETSMESLS GLRPAFDPAN GTVTAGTSSA
LSDGASAMLV MEEEKAKALG LPIRARIRSM AVAGCDAAIM GYGPVPATKK ALERAGLTID
DLDVIELNEA FAAQSLPCVK DLGLMDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM
EAKDAKYGLA TMCIGLGQGI ATVFERP
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