Gene Swoo_0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0010 
Symbol 
ID6114227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp13648 
End bp14328 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content50% 
IMG OID641631485 
Productallophanate hydrolase subunit 1 
Protein accessionYP_001758406 
Protein GI170724380 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2049] Allophanate hydrolase subunit 1 
TIGRFAM ID[TIGR00370] conserved hypothetical protein TIGR00370 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000602904 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCAATA CCAGCCCTAA GGTATATCGC TTAGGGGAGA GGGCAATCGT ACTCGACTGC 
AGCGAACTTT TCCCAGCACT CTCAAAGCTA ACCATTCAGA GCAGGATCTG GGAATTGGCT
CAAAAGTGCA GAGAGGACAA CACTTTTACC GATCTTGTCC CTGGGATGAA TAACCTGACC
CTATTTATTA AAGATGCCAA TCAACTGACA GACTGGATTG CGAGGCTGCC AGAGCTTTGG
AGAGATACCA CAGGCATAGA GCTTGATAAC CCAAGCATAG AGATCCCTGT CGTTTACGGT
GGAAAATATG GGCCAGATCT CGACGAAGTT GCCAGAGTCC ACCAGCTGGA CACGAATGAG
GTGATCCGCA TGCACACAGC CCCTGAATAC ACTGTGCTAT TTCTTGGTTT CCAGCCGGGA
TTTCCCTACT TAGATGGCCT TAACAATCAC TTATTCACCC CAAGACTTAA CACACCAAGA
TTATCCATAC CGGCAGGCTC TGTAGGTATT GGTGGCGAGC AAACGGGTAT TTACCCCCAA
GAGGCACCGG GTGGCTGGCA GCTCATCGGC CGCACCAACC TTCCCCTGTT CACACCTGAC
ACCCCAAAGA ATCCAACCCT TCTTGCTCCC GGATACAGGG TACGGTTTAC ACAAGTCAGC
AGTTTAGAGT TTACCCAATG A
 
Protein sequence
MSNTSPKVYR LGERAIVLDC SELFPALSKL TIQSRIWELA QKCREDNTFT DLVPGMNNLT 
LFIKDANQLT DWIARLPELW RDTTGIELDN PSIEIPVVYG GKYGPDLDEV ARVHQLDTNE
VIRMHTAPEY TVLFLGFQPG FPYLDGLNNH LFTPRLNTPR LSIPAGSVGI GGEQTGIYPQ
EAPGGWQLIG RTNLPLFTPD TPKNPTLLAP GYRVRFTQVS SLEFTQ