Gene Swoo_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0004 
Symbol 
ID6114221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp4226 
End bp6643 
Gene Length2418 bp 
Protein Length805 aa 
Translation table11 
GC content46% 
IMG OID641631479 
ProductDNA gyrase, B subunit 
Protein accessionYP_001758400 
Protein GI170724374 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01059] DNA gyrase, B subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.545421 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000387143 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCAGAGA ATAGTTACGA TTCTTCGAGT ATCAAGGTTC TAAAAGGCCT TGATGCGGTA 
CGTAAGAGAC CAGGGATGTA TATCGGTGAT ACCGACGATG GTACTGGTCT GCACCACATG
GTATTCGAAG TGGTCGATAA CTCTATCGAT GAAGCTTTAG CGGGCCATTG TAACGACGTT
ATCATCACTA TCCATGCTGA TGGTTCAGTA TCTGTAAAAG ATGATGGACG TGGTATCCCG
GTAGCTATTC ACCCTGAAGA GGGGGTTTCT GCCGCAGAAG TGATCATGAC GGTACTGCAT
GCTGGTGGTA AGTTCGATGA TAACTCTTAC AAGGTTTCTG GTGGTCTTCA CGGTGTTGGT
GTTTCGGTTG TAAACGCCCT ATCTAGCAAA CTTCAACTTA CTATTCGTCG TGATGGTAAG
CTTTATGAGC AGTTCTATAA CATGGGTGAG CCTGTTGAGC CGATCAAAGC GATTGGTGAT
GCAACAAACA CAGGTACTGA GATCCGTTTC TGGCCAAGCA GTGAAACTTT CTCCGATACC
CTGTTCCACT TCGATATTCT GGCCAAGCGA GTTCGTGAAC TCTCTTTTCT AAACTCAGGT
GTTGGTATCC GCTTAGTTGA TGAGCGTGAT AACAAGGATG AGTTTTTCAA GTACGAGGGC
GGTATCAGCG CTTTCGTTGA TTACTTGAAT GTGAACAAGA CTCCAGTTAA CAAAGATGTA
TTCCACTTTA TCCAAGAGCG TGAAGACGGC ATTACCGTTG AAGTTGCTAT GCAGTGGAAC
GATGGTTTCC AGGAGAATAT CTTCTGTTTC ACCAACAACA TTCCTCAACG TGATGGTGGT
ACTCACCTTG CTGGTTTCCG TGGCGCGTTA ACGCGTAACC TTAACTCCTA CATGGAGCGC
GAAGGTTATA ACAAGAAAGG TAAAACTGGC GCGACTGGCG ATGATGCCCG TGAAGGTTTG
ACCGCTGTTA TCTCTGTTAA GGTTCCGGAT CCTAAGTTCA GCTCACAGAC CAAAGATAAG
TTGGTATCGA GCGAAGTTAA GTCTGCCGTT GAACAGACTA TGGGTGAGCA GTTAGGTGAT
TACCTAATGG AGCATCCAAA CGAAGCTAAG CTGATTGTCG GTAAGATTAT CGATGCAGCC
CGTGCCCGTG AAGCGGCGCG TAAAGCACGT GAAATGACTC GTCGTAAAGG CGCATTAGAT
TTAGGTGGCC TGCCAGGTAA GCTTGCAGAT TGCCAAGAGA AAGACCCTGC TCTTTCTGAA
ATATACATAG TGGAAGGGGA CTCTGCTGGC GGTAGCGCCA AGCAGGGGCG TAACCGTAAG
AACCAAGCGA TTTTGCCACT TAAAGGTAAG ATCTTAAACG TTGAGAAAGC CCGTTTCGAT
AAGATGCTTT CATCTCAGGA AGTGGTCACG CTTATTACCG CCCTAGGTTG TGGTATTGGC
CGTGATGAAT ACGATCCTGA TAAGACCCGT TACCACAACA TCGTTATCAT GACCGATGCG
GACGTCGATG GATCGCACAT TCGTACTCTG TTACTGACCT TCTTCTTCCG TCAAATGCCT
GAGCTAATTG AACGTGGTTA CGTTTATATT GCACAGCCAC CGCTATATAA AGTGAAGAAA
GGTAAGCAAG AGCAGTATCT TAAAGATGAT CCTGCATTAA CTGAGTACCT AACTAACTTG
GCACTTGATG GTGGTGAGAT CCATCCATCT GCCGATGCGC CTGCTATGTC TGGTGCACCG
TTAGAGAAAC TGGTTTATCA GTACCGTGAA GTTGAAGCTA TCTTTGAGCG TCTTGAGCAG
AGATATCCAA AACTATTGAC TGAGCGTATG CTTTATCACC CAGCTCTAAG CCATGAGCTA
TTGAGTGATG AGGCTAAAGT TAAGCAGTGG TGTGATACCT ATGTGGCAGA TCTTGAAGAT
CGTGACACTG GTGGCGTTCA CTACAGTGCT GAAGCGTTCC TCGATCCTGA GCGCAAGGTT
TACCTACCTA AGGTGACTAT CCGTAAGCAT GGTATCGACA CTAACTTCTT GTTTACTTAT
GACTTCCTTA ACTCTCATGA TTATGAGTTG ATGACCAAGC TAGCCAATGC GCTTGAAGGT
TTGATTGAAG AGGGTGGTTA CGTTAAACGT GGTGAGCGTA TGAAGGAGGT GACAACCTTC
GTTGAAGCGC TTAACTGGTT AATGAATGAC TCTAAACGTG GTCTATATAT CCAACGTTAT
AAGGGATTGG GTGAGATGAA CCCTGAGCAG TTGTGGGAAA CTACAATGGA TCCTGAGTCG
CGCCGTATGC TAGTTGTGAC TATCGAAGAT GCGATTGCCG CTGACCAACT GTTTACCTGT
TTGATGGGTG ATCACGTTGA ACCGCGTCGT GACTTTATTG AGTCTAACGC GCTGAACGTA
GCTAACTTGG ACGTTTAA
 
Protein sequence
MSENSYDSSS IKVLKGLDAV RKRPGMYIGD TDDGTGLHHM VFEVVDNSID EALAGHCNDV 
IITIHADGSV SVKDDGRGIP VAIHPEEGVS AAEVIMTVLH AGGKFDDNSY KVSGGLHGVG
VSVVNALSSK LQLTIRRDGK LYEQFYNMGE PVEPIKAIGD ATNTGTEIRF WPSSETFSDT
LFHFDILAKR VRELSFLNSG VGIRLVDERD NKDEFFKYEG GISAFVDYLN VNKTPVNKDV
FHFIQEREDG ITVEVAMQWN DGFQENIFCF TNNIPQRDGG THLAGFRGAL TRNLNSYMER
EGYNKKGKTG ATGDDAREGL TAVISVKVPD PKFSSQTKDK LVSSEVKSAV EQTMGEQLGD
YLMEHPNEAK LIVGKIIDAA RAREAARKAR EMTRRKGALD LGGLPGKLAD CQEKDPALSE
IYIVEGDSAG GSAKQGRNRK NQAILPLKGK ILNVEKARFD KMLSSQEVVT LITALGCGIG
RDEYDPDKTR YHNIVIMTDA DVDGSHIRTL LLTFFFRQMP ELIERGYVYI AQPPLYKVKK
GKQEQYLKDD PALTEYLTNL ALDGGEIHPS ADAPAMSGAP LEKLVYQYRE VEAIFERLEQ
RYPKLLTERM LYHPALSHEL LSDEAKVKQW CDTYVADLED RDTGGVHYSA EAFLDPERKV
YLPKVTIRKH GIDTNFLFTY DFLNSHDYEL MTKLANALEG LIEEGGYVKR GERMKEVTTF
VEALNWLMND SKRGLYIQRY KGLGEMNPEQ LWETTMDPES RRMLVVTIED AIAADQLFTC
LMGDHVEPRR DFIESNALNV ANLDV