Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mrad2831_5424 |
Symbol | |
ID | 6141497 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium radiotolerans JCM 2831 |
Kingdom | Bacteria |
Replicon accession | NC_010505 |
Strand | + |
Start bp | 5727648 |
End bp | 5728499 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641631126 |
Product | squalene synthase HpnD |
Protein accession | YP_001758054 |
Protein GI | 170751794 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.766675 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGCCA CCGCCACGCC CGCCCAGGAC CCGGAGAGCG CCGCCCCGGC GCTGCCCGCC GCCGGCTCCT CCTTCTACAC GGCGATGCGC CTGCTGCCGA AGGAGCGGCG GGAGGCGATG TACGCCGTCT ACGCCTTCTG CCGCGCCGTC GACGACGTCG CCGACGACGG CGGCACCCGC GCCGTCCGGC AGGTCGAGCT CGACCGCTGG CGGGCCGACA TCGACGCCCT CTACGCCGGC CGGCCGGCCG CGCGCGTGCG CGACCTCGTG GAGCCCGTGC GCCGCTTCGG CCTGAAGCGC GAGGATTTCC AGGCGGTCAT CGACGGCATG GCGATGGACG CCGTCGAGGA CATCGTCGCC CCCGACGCCG AGACCCTCGA CCTCTACTGC GACCGGGTCG CGAGCGCGGT CGGCCGGCTG TCGGTGCGGA TCTTCGGCAT GCCGGAGGCG GACGGCATCC GGCTGGCGTG GCATCAGGGC CGCGCGCTCC AGCTCACCAA CATCCTGCGC GACATCGACG AGGATGCCGA GCGCGGCCGC CTCTACCTGC CCCGGGAGAA GCTCCGGGCG ATCGGCCTCA CCGACCCGAC GCCGGTCCAG GCGATCAGCC ATCCCCGCAT CGGCGAGGTC TGCGTCTCCC TCGCCCGCGA GGCCGAGGAC CATTATCAGG CGACCTGGGA GATCATCCGG CGCAGCCCCC GCAAGGCGAC CAAGGCCGCC CGGCTGATGG CCGCCGCCTA TCACCTCTAC CTCAAGGCGG TCCTCGCGCG CGGCTGGGCG ATGCCCCGCG CCCGGGTGAA GCCCGGCAAG CTCGCGCTGC TGGGCGTCGT CCTCCGCCAC GGCCTGATCT GA
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Protein sequence | MTATATPAQD PESAAPALPA AGSSFYTAMR LLPKERREAM YAVYAFCRAV DDVADDGGTR AVRQVELDRW RADIDALYAG RPAARVRDLV EPVRRFGLKR EDFQAVIDGM AMDAVEDIVA PDAETLDLYC DRVASAVGRL SVRIFGMPEA DGIRLAWHQG RALQLTNILR DIDEDAERGR LYLPREKLRA IGLTDPTPVQ AISHPRIGEV CVSLAREAED HYQATWEIIR RSPRKATKAA RLMAAAYHLY LKAVLARGWA MPRARVKPGK LALLGVVLRH GLI
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