Gene Mrad2831_5424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMrad2831_5424 
Symbol 
ID6141497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium radiotolerans JCM 2831 
KingdomBacteria 
Replicon accessionNC_010505 
Strand
Start bp5727648 
End bp5728499 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content74% 
IMG OID641631126 
Productsqualene synthase HpnD 
Protein accessionYP_001758054 
Protein GI170751794 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.766675 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGCCA CCGCCACGCC CGCCCAGGAC CCGGAGAGCG CCGCCCCGGC GCTGCCCGCC 
GCCGGCTCCT CCTTCTACAC GGCGATGCGC CTGCTGCCGA AGGAGCGGCG GGAGGCGATG
TACGCCGTCT ACGCCTTCTG CCGCGCCGTC GACGACGTCG CCGACGACGG CGGCACCCGC
GCCGTCCGGC AGGTCGAGCT CGACCGCTGG CGGGCCGACA TCGACGCCCT CTACGCCGGC
CGGCCGGCCG CGCGCGTGCG CGACCTCGTG GAGCCCGTGC GCCGCTTCGG CCTGAAGCGC
GAGGATTTCC AGGCGGTCAT CGACGGCATG GCGATGGACG CCGTCGAGGA CATCGTCGCC
CCCGACGCCG AGACCCTCGA CCTCTACTGC GACCGGGTCG CGAGCGCGGT CGGCCGGCTG
TCGGTGCGGA TCTTCGGCAT GCCGGAGGCG GACGGCATCC GGCTGGCGTG GCATCAGGGC
CGCGCGCTCC AGCTCACCAA CATCCTGCGC GACATCGACG AGGATGCCGA GCGCGGCCGC
CTCTACCTGC CCCGGGAGAA GCTCCGGGCG ATCGGCCTCA CCGACCCGAC GCCGGTCCAG
GCGATCAGCC ATCCCCGCAT CGGCGAGGTC TGCGTCTCCC TCGCCCGCGA GGCCGAGGAC
CATTATCAGG CGACCTGGGA GATCATCCGG CGCAGCCCCC GCAAGGCGAC CAAGGCCGCC
CGGCTGATGG CCGCCGCCTA TCACCTCTAC CTCAAGGCGG TCCTCGCGCG CGGCTGGGCG
ATGCCCCGCG CCCGGGTGAA GCCCGGCAAG CTCGCGCTGC TGGGCGTCGT CCTCCGCCAC
GGCCTGATCT GA
 
Protein sequence
MTATATPAQD PESAAPALPA AGSSFYTAMR LLPKERREAM YAVYAFCRAV DDVADDGGTR 
AVRQVELDRW RADIDALYAG RPAARVRDLV EPVRRFGLKR EDFQAVIDGM AMDAVEDIVA
PDAETLDLYC DRVASAVGRL SVRIFGMPEA DGIRLAWHQG RALQLTNILR DIDEDAERGR
LYLPREKLRA IGLTDPTPVQ AISHPRIGEV CVSLAREAED HYQATWEIIR RSPRKATKAA
RLMAAAYHLY LKAVLARGWA MPRARVKPGK LALLGVVLRH GLI