| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrad2831_3804 |
|---|
| Symbol | |
|---|
| ID | 6139857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium radiotolerans JCM 2831 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010505 |
|---|
| Strand | + |
|---|
| Start bp | 4044934 |
|---|
| End bp | 4047060 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641629514 |
|---|
| Product | carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_001756462 |
|---|
| Protein GI | 170750202 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0335542 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACCC GTTCCGTGCC CCTGGTCCGC ACCGCGGCGC TTGTCCTGAC CGCGCCCCTC
CTCGCGCCCG TCGCGGCACG GGCGGCCGAC CTGTTCGCCC CGCGCCCAAC CGCCCAGGCG
CCGGCCTACA CCGACTGGTC AGGAGGCTAT GTCGGCCTGG AGGGGAGCGC AGGCGGCTCC
TACGGTGCCT ACAGTTTCGG CCCCACGACG ATCGGAGGCC GGCCGGTCCC GCCGTTCAAG
AGCGGCGATT CCACCGGCCG CAGCGATCAG GGCAAGAACG CCACGACGGC AACCGGCGGC
CTGTTCGGCG GCTGGAACTG GCAGGCCGGG CCGTGGGTCT ACGGCATCGA GGCCAGTCTC
GACGCGGCGA ATCTGAAGCG GCCGGTCCCC TCGACCATCG CGGGCTTCGG CTACGCGGAC
ACGACGCCGG CCTTCAACAT CGTGCGCGCC AAGACCGACC TCTACGGCGC CCTCCGTGCC
CGGCTGGGCT ACAGCTTCGA CCGCTACCTG ATCTACGGCA CCTTCGGGCT CGCGGGGGCG
AACGCGCGCA TCCTGGCGAA CTATCCGGAC CTCGACGCGG GCGGGCAGAC CGCGGCGCGG
CGGGACCTCG ACTATGTCGG CTTCACCCTC GGCGCGGGCG TGCAGTACGC CATCACCGAC
AGCCTCGCCC TGGGGATCGA CTACCGCTAC ATCGATCTCG GCGGCAGCCG GCGCTTCCCG
CTGGGCGCTG TGCCCGGCGA CGCGGGCGGG CCGGTCACGA CCCGGGCGAG CTTCAACTCC
AACCAGCTGT TCGCGCGGCT GATGTGGTTC CCGGACGGCC TGAAGGTCCC GCCGGACCCG
GACGAGACCG CCCCGCACGA CCCCGACAAC GGCGATACCG GCCGCTTCTC GCTGCACGGC
CAGACGACGC TGATCGCGCA GGGCGTGCCC GGCTTCCGCT CGCCCTACGA GGGCGCGCAG
AGCCTGATCC CCCACCAGGC CCGGCAGACC ACCACGGCCA CGATCTTCCT CGGGCTCAAG
CTCACCGACA GCACCGAGGT CTACTACAAC CCCGAGTTCA GCCAGGGCTT CGGCCTGTCG
CGGACGCTGG GCGTCGCCGG CTTCGTCAAC GGCGAGGCGC AGAAGGCCGG CGCCCCCTTC
CCGAAGCTGC GCTCGAACCG CTACTACGTG AAGCAGACCT TCGGGCTGGG CGGCGAGACC
GTGGAGGTGC CGGACGGCCC GAACCAGGTG GCCACCCGCT ACGACGCCGA GCGGATCACG
CTGATCGCCG GCAAGTTCGC GCTGGGCGAC TTCTTCGACG GCAACATCTA CGCGCACGAT
CCGCGCGTGG ACTTCTTCAA CTGGTCGCTC TGGGGCTCGT CGGCCTGGGA CTTCCCGGCC
AATCTCCCGG GCTTCACGCA GGGCGTCTAC GCCGAGTACA ACCGGCCGGA ATTCGCGATC
CGCGCCGCCT ACACGCAGGT GCCCAAGGAG CCGTCGAGCG ACGTGCTCGA CCCGCGGGTG
TTCCGGCGCG CCGGGCTGAA CGTCGAGTTC GAGGAGCGCC ACGTCCTCCC GTGGCTGGAG
CAGCCCGGCA AGATCCGCAT CGGGCTGTTC TCGAATGTCG GCGTCTCGGC CAACAACCGC
GATGTGGTCA CCCTGACGCA GCTCGGCCTG TTCGACGACA TCAACGACGC CGTCGCGGCG
ACCCGGCGGC CCCGCCGCAA GACCGGCGGC TACATCAACC TGGAGCAGGC GCTGACGCCC
GAACTCGGGC TGTTCGCCCG GGCGAGCCTG AACGACGGGC GCACCGAGAA CATCTCCTTC
ACCGACATCG ACCAGAGCTT CTCCGGAGGC CTGTCGCTGA AGGGCAAGGC CTGGGACCGG
CCCGACGACA CGGTCGGAAT CGGCGCCGCG ATGAACGGGC TCTCGCCGTC GCACCGGGCC
GCCTTCGCGG CCGGCTATCT CGGCCTGCTG GTCGGGGACG GGCGCCTCAA CTACGGCACC
GAGCGCGCGC TGGAGACCTA CTACGCCCTG AACCTCACGA AGTTCGTCAC CCTGACCTTC
GACTACCAGT TCATCGACAA TCCCGGATAC AACCGCGACC GCGGCCCGGC ACACTTCTTC
GCCTCGCGAC TGCACGCGGA TTTCTGA
|
|---|
| Protein sequence | MRTRSVPLVR TAALVLTAPL LAPVAARAAD LFAPRPTAQA PAYTDWSGGY VGLEGSAGGS
YGAYSFGPTT IGGRPVPPFK SGDSTGRSDQ GKNATTATGG LFGGWNWQAG PWVYGIEASL
DAANLKRPVP STIAGFGYAD TTPAFNIVRA KTDLYGALRA RLGYSFDRYL IYGTFGLAGA
NARILANYPD LDAGGQTAAR RDLDYVGFTL GAGVQYAITD SLALGIDYRY IDLGGSRRFP
LGAVPGDAGG PVTTRASFNS NQLFARLMWF PDGLKVPPDP DETAPHDPDN GDTGRFSLHG
QTTLIAQGVP GFRSPYEGAQ SLIPHQARQT TTATIFLGLK LTDSTEVYYN PEFSQGFGLS
RTLGVAGFVN GEAQKAGAPF PKLRSNRYYV KQTFGLGGET VEVPDGPNQV ATRYDAERIT
LIAGKFALGD FFDGNIYAHD PRVDFFNWSL WGSSAWDFPA NLPGFTQGVY AEYNRPEFAI
RAAYTQVPKE PSSDVLDPRV FRRAGLNVEF EERHVLPWLE QPGKIRIGLF SNVGVSANNR
DVVTLTQLGL FDDINDAVAA TRRPRRKTGG YINLEQALTP ELGLFARASL NDGRTENISF
TDIDQSFSGG LSLKGKAWDR PDDTVGIGAA MNGLSPSHRA AFAAGYLGLL VGDGRLNYGT
ERALETYYAL NLTKFVTLTF DYQFIDNPGY NRDRGPAHFF ASRLHADF
|
|---|
| |