| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_5062 |
|---|
| Symbol | |
|---|
| ID | 6114055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 5603730 |
|---|
| End bp | 5605886 |
|---|
| Gene Length | 2157 bp |
|---|
| Protein Length | 718 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641624877 |
|---|
| Product | type I secretion system ATPase |
|---|
| Protein accession | YP_001751907 |
|---|
| Protein GI | 170724219 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.507618 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAATCCG AAGTCAGTCG AGTGCAACTC AGCCACGATC CACGCAGTCA GCACGATGAC
CCGTTGCTGG ATAGTCTGCT GACCCTGTGT GTTCTGCACC AGAAGCCCGC AAGCAGGGCC
ATGCTGACTA CCGGCCTGCC CTTGCCGGCC CAGCGCCTGA GCCCCGATCT GCTGCCTCGC
GCGGCTGCCC GTGCCGGGCT GCAAGGGCGC GTACTTCAGC GCAAACTGGA GCAGATCCCG
AGCATCGCCA TGCCGGCCAT GCTGCTGCTC AATGAAGGCC GAAGCGCCGT GCTGGCGGGC
TGGGAAAACG AAGACACCGC TCGCCTGCTG CTCAGTGAAA GCGACGGCGG TGAGGTGCTG
GTGAGCCGCG AGGCGCTGCA GGGCGACTAC AGCGGCAAAG TGTTCTTCGC CCAGCCGCAG
CATAAGTTCG ATGTGAACCA CGGCAACCTC ATCCCGCGCG CCCGCTCCTG GTTCCGCGAC
ACGCTGATGC GCAGCAAATG GCTGTACATC GACGCCATTG CTGCCAGCTT GGTGATCAAC
CTGATTGCAC TGGCTGCGCC TTTGTTCGTG ATGAATGTGT ACGACCGCGT GGTTCCCAAC
CAGGCCACGT CGACGTTATG GGTGCTGGCG GCAGGCATCG GCTTCGCCTA CATATTCGAC
CTCATTCTCA AAGGCCTGCG CGGCCTCTGC CTGGACCTTG CAGGCAAGAA GACCGACTTG
ATCATTTCAG CCACGCTGTT CGAGCGGATC GTCGGCATGT CGATGAAATA TCGCCCTGCC
CGGGTCGGCA GCTTTGCCCA GAACATCCAC GAATTCCAAG GCCTGCGCGA CTTCCTCGCT
TCGCTCACAC TGACCACCCT GATCGATCTG CCGTTCACCC TGCTGATCCT TCTTGTCATC
GCTATCATCG GCGGGCATCT GGTATGGATC CCGATCCTTG CGTTCCCGCT GGCTTTGGGC
ATCGGCTATG CGCTGCAGAA GCCGTTGATG GCGACCATGG AGCGCACCAT GGCGCTGGCA
TCGGAGCGCC AGTCCAGCCT GATCGAAACG CTGGCCGGCC TGGATGCAGT CAAGGTCAAC
AACGCCGAGA GCGAACGCCA GTACATGTGG GAGCAGACCC TTGGCACCCT CAGCCGCCTC
GAGCTGCGCG TCAAAGTGCT GTCGAGCCTG GCCATGAACA TCACCTTGCT CATCCAGCAG
CTGGCGGGGG TGGCGATGAT CTGCGTCGGC GTTTACCTGA TCATCGACGG CAACCTGAGC
ATGGGCGGTC TGGTCGCCTG CTACATGCTC AGCGGTCGAG CGCTAGGCCC GTTGAGCTCG
CTCAACGGTT TGCTGGCCCG CTACCAGCAG GCCAAGGTGA CCATGGTGGC CACCGACCAG
ATGATGGAGC TACCGCAGGA GCGCAATTTC GATGAACGTC CTCTGAGCCG TCAGGTGCTG
CAGGGCGCGG TCGAATTCCG GGGTGTAGAT TTCACCTACC CCAATCAGCA GAACCTGGCG
CTCAAAGGCA TCAACCTGAA TATCCGCCCG GGCGAGAAGG TCGGCATCAT CGGCCGCAGC
GGCTCGGGCA AAAGCTCGCT GGCCAAGCTC ATCGTCGGCC TGTACGAGGC AGACAATGGC
TCCTTGCTGG TCGATGGCGT TGATATCCGC CAGATCGACG TCAGTGAGTT GCGCCATAAC
ATCGGCTATG TCCCGCAAGA CATTCAGTTG CTGGCAGGCA CTTTGCGCGA CAATCTTGTC
AGCGGTGCCC GCTACATTGA AGACGAATTG ATCCTGCAAG CCGCCGAGCT GGCCGGCGTG
CATGAATTCG CTCGCCTGCA TCCCGACGGT TACGAACTGC AGGTCGGCGA ACGCGGCCAG
AACCTTTCCG GAGGGCAGCG GCAGAACGTT GCCCTGGCTC GGGCGCTGCT GCTCAACCCG
CAGATCCTGC TGTTGGACGA ACCCACCAGT GCCATGGACA ACACGGGGGA AGAACGCCTC
AAACAGCGCC TGGCTGCTGT CATCGAAGGC AAGACCGTTT TGCTGGTGAC CCACCGGGCG
TCCTTGCTGT CGCTGGTGGA CCGGTTGATC GTCATCGATC GAGGACAGAT TGTTGCGGAT
GGCCCGAAAG CCGCCGTCAT GGATGCGCTT AAAAAGGGGC AGATCAGTGT TGCATAA
|
|---|
| Protein sequence | MESEVSRVQL SHDPRSQHDD PLLDSLLTLC VLHQKPASRA MLTTGLPLPA QRLSPDLLPR
AAARAGLQGR VLQRKLEQIP SIAMPAMLLL NEGRSAVLAG WENEDTARLL LSESDGGEVL
VSREALQGDY SGKVFFAQPQ HKFDVNHGNL IPRARSWFRD TLMRSKWLYI DAIAASLVIN
LIALAAPLFV MNVYDRVVPN QATSTLWVLA AGIGFAYIFD LILKGLRGLC LDLAGKKTDL
IISATLFERI VGMSMKYRPA RVGSFAQNIH EFQGLRDFLA SLTLTTLIDL PFTLLILLVI
AIIGGHLVWI PILAFPLALG IGYALQKPLM ATMERTMALA SERQSSLIET LAGLDAVKVN
NAESERQYMW EQTLGTLSRL ELRVKVLSSL AMNITLLIQQ LAGVAMICVG VYLIIDGNLS
MGGLVACYML SGRALGPLSS LNGLLARYQQ AKVTMVATDQ MMELPQERNF DERPLSRQVL
QGAVEFRGVD FTYPNQQNLA LKGINLNIRP GEKVGIIGRS GSGKSSLAKL IVGLYEADNG
SLLVDGVDIR QIDVSELRHN IGYVPQDIQL LAGTLRDNLV SGARYIEDEL ILQAAELAGV
HEFARLHPDG YELQVGERGQ NLSGGQRQNV ALARALLLNP QILLLDEPTS AMDNTGEERL
KQRLAAVIEG KTVLLVTHRA SLLSLVDRLI VIDRGQIVAD GPKAAVMDAL KKGQISVA
|
|---|
| |