| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_5002 |
|---|
| Symbol | |
|---|
| ID | 6113994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 5527047 |
|---|
| End bp | 5527961 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641624816 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001751847 |
|---|
| Protein GI | 170724159 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.415696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATCG ACCTTCGCCA GCTCCGCCAT TTCATCGCCC TTGTCGAACA CCGCAGTTTC
GTCGCTGCGG CGGCTGCGGT GAACCTGTCG CAATCGGCCT TCAGCCGCAG CATCCAGACC
CTGGAGCACA ACGTCGGCTG CCGCCTGGTC GACCGCGCCA GCAAGGAGCT TTCACCCACC
CGTCAGGGCC TGCTGGTGCT GGAGCACTCC CGCCGGCTGG TGCACGGCGC GCACAATCTG
GTTAACGAAA TCCACCAGTT CAATGGCGCC ACTACGGGCG TAGTGTGCTT CGGCTCAGGC
CCTGCCCCCG CGGGCGGGCT AGTGCCACGG GCAGTGGCGC GCTTCGTCGC TGAATACCCG
GCGGCGCGTA CCTGTTTTCA GGTGGATAAC TGGCAGGCCC TGAACCGCAA GCTGATTGCC
GAGGAGATCG AATTCTTCGT TGCCGACACC CGCCAGTTCG AGTCCGACCC GGACTACCGC
GTGCACAAGC TGACACCACA GCGCTGGCAC TTCTGTTGCC GCGCCGGACA CCCGCTGACC
GAGCGCTACC AGGTTAATGC GCGGGATGTA TTCGAGTACC CGCTGGCGAC CACTTTCCGC
CCGCCGAACA TCCGCAAGAT CCTCACTGAA CTGAGCGGCA GGCAGGACTT TCTGCCCTCA
GTAGAGTGCG AGCACGGCTA TGCGTTGCTC AACGTGGTGA TGCACTCGGA TACCATCGGC
ATTGCCTGCA ATGCCAACTT GCGGCCTTAT CAGGCGGGGC AGGGGCTGGT GGCGCTGCGG
TTGGCGGACC TGGCGCCGGA GCAGGAGGAG TCTTTCTACA CCCGCTATGG CGTGGTTAGC
CGGGTGGGGT ATGGGTTGTC GCCACTGGCG CAAGGAATGG TCAGGCAGTT GGTGGCCTGT
GATACCGAAG AGTAA
|
|---|
| Protein sequence | MHIDLRQLRH FIALVEHRSF VAAAAAVNLS QSAFSRSIQT LEHNVGCRLV DRASKELSPT
RQGLLVLEHS RRLVHGAHNL VNEIHQFNGA TTGVVCFGSG PAPAGGLVPR AVARFVAEYP
AARTCFQVDN WQALNRKLIA EEIEFFVADT RQFESDPDYR VHKLTPQRWH FCCRAGHPLT
ERYQVNARDV FEYPLATTFR PPNIRKILTE LSGRQDFLPS VECEHGYALL NVVMHSDTIG
IACNANLRPY QAGQGLVALR LADLAPEQEE SFYTRYGVVS RVGYGLSPLA QGMVRQLVAC
DTEE
|
|---|
| |