| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4994 |
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| Symbol | |
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| ID | 6113986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5513876 |
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| End bp | 5515771 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641624808 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001751839 |
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| Protein GI | 170724151 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.135413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGTTT CCGTTCGCGA CGCCTTGCGC ATGGCCGCGC TATATCTGGT GCTCTCGATC
CTCTGGCTGG TGCTGTCAGA GGTGGTTTTG CGCAGCATGT CTGAAGACCC CCTGGCCTTG
GCCGTAGGGC GGCAGATCAA TGTTGTCCTT TGGGTGCTCT CCAGTGCGGC GCTGATTTTC
TTTACTCGTG CCCGTCTGCT CAATTTCATC GGTGTCGGCG CACGTCTTCG CAGCGAGGAC
CGCGCCCGCC TGCGTATGGC CGCAGCCGTG TTCGACAGCA CCCTGGAGGG CGTGCTGGTC
ACTGACCGCC AGGGGCTGAT CGTGCACGTC AACCGCGCGT TCATGCGGAT CACCGGCTAC
CAGCAGGATG AAGTGCTTGG CCAGCGCCCG AGCAAGTTCA AGTCGGGCCG GCACGACGTG
CCGTTCTACC AGCAGATTTA TGCCACCCTG GCAGAGAAGG GCGAGTGGAG CGGGGAGATA
TGGAACCGGC GCAAGAGCGG TGAAATCTAC CCGCAATGGC AGACGATCCG TGCCATTCAC
GATGATGGCG GCGAGATGAC CCATTATGTT GCGGTATTCA GCGACATCAG CGCGATCAAG
CATACCGAGC AGGAATTGGC CTATCTGGCC CACCACGACC CCCTTACCGG TTTGCCCAAC
CGTCTATTGT TCAGCGACCG GGCCGAGCAG GCACTGGCGT CGGCACAGGC CAACAAGCGT
GGATGTGCTT TGTTGCTGCT TGACCTGGAC CATTTTCAGA GCATCAACGA CGGGTTGGGC
CACACCATCG GTGATCAGCT GCTCAAGCTG GTAGGCGAGC GTTTGGCCGA GGTAGTGGGC
AATGGCGTGA CTTTGGCGCG CCTGGGTGGT GACGAGTTTG GTGTGCTGGC GGAGAACTGC
CAGCAGGTCG GCCAGGCCGG CAAACTGGCA CAGGCGCTCA TCGAACGCAT GCGTGAACCG
TTCGATTTCG ACGGGCATCG GCTGTTCATC AGCGTCAGCG TTGGCATCAG CCTGTTCCCC
AGCGATGCAT TGAGCGCAGA ACAGCTACTG CGCAACGCTG ACTCGGCGCT GTTCAAGGCC
AAGCACAATG GCCGCGCCTG TTACGCGCTG TACACCGAAG AGCTGACGGC GCACGCCCAG
CACCGGGTGG AAACGGCAGG CGAGCTGCGC CGTGCGCTGG CGCAAGACGA GCTACGGGTG
TTCTATCAGC CGGTGTTCCA CCTGTTCACC TCGAAGATGG TCGGGGTGGA GGCACTGGTG
CGTTGGCAAC ACCCGCAACG TGGCTTGGTG CCGCCAAGCG AATTCATCCC TATCGCCGAG
CGTACCGGGC TGATTGCCGA CATCGATGCC TGGGTGTTGC GCGAGGCGTG CCGCCAGATG
GTCAGTTGGC AGGCTGACGG GCGCCTGCTC GAGTTCGTTG CGGTGAACAT CTCCAGCCGG
TTGTTCGGCC AGCGTGAGCT GTACCGGCAA GTGGCCGGGG TGTTGCACGA AACCGGTCTG
GATCCTTCGC TGCTGGAGGT GGAGGTGACC GAGAGTGCGG TCATGGAAGA TCCCGAAGTC
GCGCTGGAGC AGTTGCACCG GTTACGTGAG CTGGGCTTGA ACCTGGCAAT CGATGACTTT
GGCACCGGCT ACTCGTCGTT GCTGCGGCTA AAGCGCCTGC CGGTGCAGAA GCTGAAGATC
GACCAGGGCT TCGTCGCCGG CTTGCCGATG GATGACGACG ACGTCGCGAT CGTGCGGGTG
ATCATCGCCC TGGCCCGGAG CATGGGCATG CAGGTGCACG CCGAAGGCAT CGAGCAGCCT
GAGCAGGCCA GGTTCCTGCT GGAGCAGCAG TGCCAGCTGG GGCAGGGCTA CTGGTTCGGG
CGGCCCGTGC CGGCTGAGGG TTTGCGTTGG AGCTGA
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| Protein sequence | MSVSVRDALR MAALYLVLSI LWLVLSEVVL RSMSEDPLAL AVGRQINVVL WVLSSAALIF
FTRARLLNFI GVGARLRSED RARLRMAAAV FDSTLEGVLV TDRQGLIVHV NRAFMRITGY
QQDEVLGQRP SKFKSGRHDV PFYQQIYATL AEKGEWSGEI WNRRKSGEIY PQWQTIRAIH
DDGGEMTHYV AVFSDISAIK HTEQELAYLA HHDPLTGLPN RLLFSDRAEQ ALASAQANKR
GCALLLLDLD HFQSINDGLG HTIGDQLLKL VGERLAEVVG NGVTLARLGG DEFGVLAENC
QQVGQAGKLA QALIERMREP FDFDGHRLFI SVSVGISLFP SDALSAEQLL RNADSALFKA
KHNGRACYAL YTEELTAHAQ HRVETAGELR RALAQDELRV FYQPVFHLFT SKMVGVEALV
RWQHPQRGLV PPSEFIPIAE RTGLIADIDA WVLREACRQM VSWQADGRLL EFVAVNISSR
LFGQRELYRQ VAGVLHETGL DPSLLEVEVT ESAVMEDPEV ALEQLHRLRE LGLNLAIDDF
GTGYSSLLRL KRLPVQKLKI DQGFVAGLPM DDDDVAIVRV IIALARSMGM QVHAEGIEQP
EQARFLLEQQ CQLGQGYWFG RPVPAEGLRW S
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