| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4983 |
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| Symbol | |
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| ID | 6113975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5501522 |
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| End bp | 5503519 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641624797 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001751828 |
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| Protein GI | 170724140 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.684113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.911624 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAC CGACCTCTTC CAACAGCCAG ATCCGCATGA ACCCTCCGGT GTTCTATTTT
GCGGCAAGCT TCATACTCAT CTTCGGCCTG GTGGTCATCG CCCAACCTCA AGCAGCGGGC
GACTGGCTCT TGGCTGCGCA GAACTGGGCG GCCAATACGG TCGGCTGGTA CTACATGCTG
GCCATGACCC TGTACCTGGT CTTCGTGGTG GTCACCGCCT TGTCCGGCTA CGGCAAGATC
AAGCTCGGTG CCGACCACGA CGAACCCGAG TTCAGCTACC TGTCGTGGGC CGGCATGTTG
TTCGCCGCCG GTATCAGCAT CACCCTGTTC TTCTTCTGCG TTTCCGAACC CCTGACCCAC
ATGCTCCAGC CCCCCCAAGG TGAGGCGGGC ACGGCGGAGG CCGGGCGCCA GGCGATGCAG
ATACTGTTCC TGCACTGGGG CCTGCATGGC TGGGGCGTGT TTGCCTTCGT CGGCATGGCG
CTGGCCTATT TCGCCTATCG CCACAACCTG CCGTTGGCTT TGCGTTCGGC GCTGTATCCG
CTGATCGGCA AGCGTATCAA CGGGCCGATC GGCTACGCGG TAGACGGTTT CGGCATCATC
GCCACGGTGT TCGGCCTTGG CGCTGACATG GGCTTCGGGG TGCTGCACCT CAATGCCGGC
CTCGACTACC TTTTCGGCAT CAGCCATAGC CAATGGGTGC AGATCGCGCT CATCGTCCTG
ATGATGGGCG CTGCGGTGGC TGTAGCGGTT GCGGGGGTAG AGAAGGGTGT TCGGGTGATG
AGCGACATCA ACCTGTTCCT GGCCTGTGCC CTGCTGCTGT TCGTGCTGTT TGCCGGGCCC
ACCCAGCACC TGTTCAATAC CCTGATCCAG AACCTTGGCG ATTACCTTGG CGCCCTGCCA
CGCAAGAGCT TCGACGTTTA TGCCTACGGC GAAAACCGTG ACTGGCTGGG TGGCTGGACG
GTGTTCTACT GGGCCTGGTG GATTGCCTGG GCGCCTTTCG TGGGGCTGTT CATCGCCCGT
ATCTCGCGTG GCCGAACCAT CCGTGAATTC GTCTTCGGCG TGCTGCTGAT CCCGCTGGGC
TTCACCCTGG CGTGGATGTC GATCTTCGGC AACAGCGCGC TGGACCAGGT GCTGAACCAC
GGCATGACCG CGCTCGGCCA GTCGGCCATC GATAACCCGT CGATGAGCCT GTACCTGCTG
CTGGAGACCT ACCCGTGGAG CAAGGCCGTC ATCGCGGTGA CGGTGTTCAT CAGCTTCGTG
TTCTTCGTCA CATCGGCGGA CTCGGGCACG GTGGTGCTCT CGACCTTGTC CGCCAAGGAT
GGCGGTGCTG ATGAAGACGG GCCGAACTGG TTGCGGATCT TCTGGGGCGC GATGACTGCG
CTGATCACTA GCAGCCTGCT GTTCGCCGGC AGCATCGACT CGCTCAAATC GGCGGTGGTG
CTGACCTCGC TGCCGTTCTC GTTGATCCTG CTGTGCATGA TGTGGGGGCT GCATAAGGCG
TTCTACCTGG AGTCGCAGCG CCAGATCGCC CAGTTGCATT CGCTGGCACC GTTCGCGCAG
TCCCGCCGTG GCCGTGGTGG TTGGCGCCAG CGCTTGAGCC AGGCGGTGCA CTTCCCGTCA
CGCGATGAGG TGTACCGCTT CATGGACGAC GTGGTGCGCC CGGCGATTGC CGATGTGCGC
GAGGTGTTCG AGCAGAAAGG CCTGGTACTG GTGACCCAGG ACGACCCCAG CCATGACAAC
GTCAGCCTGA AAGTGGGCCA TGGTGAAGAG CAGCCGTTCA TCTATCAGGT GCAGATGCGT
GGGTATTTCA CGCCGTCGTT CGCGCTGGGT GGGTTGGGGA CGCAGGATTT GAAGAACCGC
CGTTATTACC GGGCGGAGGT GCACCTTAGC GAGGGCAGCC AGAACTACGA CCTGGTGGGC
TACAGCAAGG AGCAGATCAT CAACGACATC CTCGACCAGT ACGAGCGGCA TATGCAGTTC
TTGCATCTGG TCCGCTAG
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| Protein sequence | MSAPTSSNSQ IRMNPPVFYF AASFILIFGL VVIAQPQAAG DWLLAAQNWA ANTVGWYYML
AMTLYLVFVV VTALSGYGKI KLGADHDEPE FSYLSWAGML FAAGISITLF FFCVSEPLTH
MLQPPQGEAG TAEAGRQAMQ ILFLHWGLHG WGVFAFVGMA LAYFAYRHNL PLALRSALYP
LIGKRINGPI GYAVDGFGII ATVFGLGADM GFGVLHLNAG LDYLFGISHS QWVQIALIVL
MMGAAVAVAV AGVEKGVRVM SDINLFLACA LLLFVLFAGP TQHLFNTLIQ NLGDYLGALP
RKSFDVYAYG ENRDWLGGWT VFYWAWWIAW APFVGLFIAR ISRGRTIREF VFGVLLIPLG
FTLAWMSIFG NSALDQVLNH GMTALGQSAI DNPSMSLYLL LETYPWSKAV IAVTVFISFV
FFVTSADSGT VVLSTLSAKD GGADEDGPNW LRIFWGAMTA LITSSLLFAG SIDSLKSAVV
LTSLPFSLIL LCMMWGLHKA FYLESQRQIA QLHSLAPFAQ SRRGRGGWRQ RLSQAVHFPS
RDEVYRFMDD VVRPAIADVR EVFEQKGLVL VTQDDPSHDN VSLKVGHGEE QPFIYQVQMR
GYFTPSFALG GLGTQDLKNR RYYRAEVHLS EGSQNYDLVG YSKEQIINDI LDQYERHMQF
LHLVR
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