Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4928 |
Symbol | |
ID | 6113919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 5443145 |
End bp | 5443897 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641624741 |
Product | extracellular solute-binding protein |
Protein accession | YP_001751773 |
Protein GI | 170724085 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0454768 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000000841601 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGACTT ACAAGAAATT CCTCCTGGCA GCTGCCGCCA CGCTGGTGTT TTCGGCCAAC GCCATGGCTG CAGAAAAACT GCGCATGGGT ATCGAGGCGG CCTACCCGCC GTTCAACAAC AAGGACGCCA GCGGTAACGT GGTCGGCTTT GACAAAGACA TCGGCGACGC CCTGTGCGCC AAGATGAAAG TCGAATGCTC GGTCGTCACC TCCGACTGGG ACGGCATCAT CCCGGCCCTC AACGCCAAGA AGTTTGACTT CCTGGTGTCG TCGCTGTCGA TCACCGACGA GCGTAAGCAG GCTGTCGACT TCACCGACCC GTACTACTCC AACAAGCTGC AGTTCATCGC GCCGAAGAAC GTCGACTTCA AGACCGACGC GGGCTACCTC AAAGGCAAGA TCATCGGCAC CCAGCGCGCC ACCCTGGCCG GTACCTGGCT GGAAGACACC TACGGCAGCG ACATCGACAT CAAGCTGTAC GACACCCAGG AAAACGCCTA CCTCGACCTG ATCTCTGGCC GAGTGGACGG CATCCTGGCC GACAAGTACG TGCAGTACGA GTGGCTCAAG AGCAAGGACG GCATGAACTT CGAGTTCAAA GGCGAACCTG TGGTCGACAG CGACAAGATC GGCATCGCCG TACGCAAGGG TGACCCGCTG CGCGAGAAGC TGAACAAAGC CCTGGCAGAA ATCAAGGCTG ACGGAACGTA CAAGAAGATC AACGACAAGT ACTTCCCATT CAGCATCGAA TGA
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Protein sequence | MQTYKKFLLA AAATLVFSAN AMAAEKLRMG IEAAYPPFNN KDASGNVVGF DKDIGDALCA KMKVECSVVT SDWDGIIPAL NAKKFDFLVS SLSITDERKQ AVDFTDPYYS NKLQFIAPKN VDFKTDAGYL KGKIIGTQRA TLAGTWLEDT YGSDIDIKLY DTQENAYLDL ISGRVDGILA DKYVQYEWLK SKDGMNFEFK GEPVVDSDKI GIAVRKGDPL REKLNKALAE IKADGTYKKI NDKYFPFSIE
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