Gene PputW619_4928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4928 
Symbol 
ID6113919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp5443145 
End bp5443897 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content58% 
IMG OID641624741 
Productextracellular solute-binding protein 
Protein accessionYP_001751773 
Protein GI170724085 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR01096] lysine-arginine-ornithine-binding periplasmic protein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0454768 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000841601 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGACTT ACAAGAAATT CCTCCTGGCA GCTGCCGCCA CGCTGGTGTT TTCGGCCAAC 
GCCATGGCTG CAGAAAAACT GCGCATGGGT ATCGAGGCGG CCTACCCGCC GTTCAACAAC
AAGGACGCCA GCGGTAACGT GGTCGGCTTT GACAAAGACA TCGGCGACGC CCTGTGCGCC
AAGATGAAAG TCGAATGCTC GGTCGTCACC TCCGACTGGG ACGGCATCAT CCCGGCCCTC
AACGCCAAGA AGTTTGACTT CCTGGTGTCG TCGCTGTCGA TCACCGACGA GCGTAAGCAG
GCTGTCGACT TCACCGACCC GTACTACTCC AACAAGCTGC AGTTCATCGC GCCGAAGAAC
GTCGACTTCA AGACCGACGC GGGCTACCTC AAAGGCAAGA TCATCGGCAC CCAGCGCGCC
ACCCTGGCCG GTACCTGGCT GGAAGACACC TACGGCAGCG ACATCGACAT CAAGCTGTAC
GACACCCAGG AAAACGCCTA CCTCGACCTG ATCTCTGGCC GAGTGGACGG CATCCTGGCC
GACAAGTACG TGCAGTACGA GTGGCTCAAG AGCAAGGACG GCATGAACTT CGAGTTCAAA
GGCGAACCTG TGGTCGACAG CGACAAGATC GGCATCGCCG TACGCAAGGG TGACCCGCTG
CGCGAGAAGC TGAACAAAGC CCTGGCAGAA ATCAAGGCTG ACGGAACGTA CAAGAAGATC
AACGACAAGT ACTTCCCATT CAGCATCGAA TGA
 
Protein sequence
MQTYKKFLLA AAATLVFSAN AMAAEKLRMG IEAAYPPFNN KDASGNVVGF DKDIGDALCA 
KMKVECSVVT SDWDGIIPAL NAKKFDFLVS SLSITDERKQ AVDFTDPYYS NKLQFIAPKN
VDFKTDAGYL KGKIIGTQRA TLAGTWLEDT YGSDIDIKLY DTQENAYLDL ISGRVDGILA
DKYVQYEWLK SKDGMNFEFK GEPVVDSDKI GIAVRKGDPL REKLNKALAE IKADGTYKKI
NDKYFPFSIE