| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4882 |
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| Symbol | |
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| ID | 6113872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5389993 |
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| End bp | 5393010 |
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| Gene Length | 3018 bp |
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| Protein Length | 1005 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641624694 |
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| Product | sarcosine oxidase alpha subunit family protein |
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| Protein accession | YP_001751727 |
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| Protein GI | 170724039 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.815421 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.441482 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA CCTATCGCCT CGCCAGCGGC GGCCGTATCG ACCGCAGCAA GGTCCTGAAC
TTCACCTTCA ACGGCAAGAC CTACCAGGGG TATGCCGGTG ACAGCCTGGC CGCCGCGCTG
CTGGCCAACG GCGTCGATAT CGTGGGCCGC AGCTTCAAGT ACTCGCGCCC ACGCGGCATC
ATCGCCGCCG GTACCGAAGA ACCGAACGCT ATCTTGCAGA TCGGCTCCAG CGAAGCCACG
CAGATCCCCA ACGTGCGCGC TACCCAGCAG GCGCTGTACG CAGGCCTTGT CGCCACCAGC
ACCAACGGCT GGCCGAACGT CAACAACGAC GTCATGGGCA TCCTCGGCAA GGTCGGCGGC
AGCATGATGC CGCCGGGCTT CTACTACAAA ACCTTCATGT ACCCGAAATC GTTCTGGATG
ACTTACGAGA AGTACATCCG TAAGGCGGCA GGCCTTGGCC GTGCGCCGCT GCAGAACGAC
CCGGACAGCT ACGACTACAT GAACCAGCAC TGCGACGTGC TGATCGTCGG TGCCGGCCCT
GCAGGCCTGG CCGCTGCCCT GGCCGCTGCG CGCAGCGGTG CCCGGGTGAT CCTGGCTGAC
GAACAGGAAG AGTTCGGCGG CAGCCTGCTC GACAGCCGCG AGACCCTCGA TGGCAAGCCG
GCCGCTGACT GGGTCAACGC CGTGGTCAAA GAACTGCAAA GCCTGCCGGA AGTGACCCTG
CTACCACGCG CCACGGTCAA CGGCTACCAC GACCACAACT TCCTGACCAT TCACGAGCGC
CTTACCGACC ACCTCGGTGA CCGTGCCCCG ATCGGCCAGG TTCGCCACCG TGTGCACCGT
GTACGTGCCA AGCGCGTTGT ACTGGCAGCC GGTGCCCACG AGCGCCCGCT GGTGTACGGC
AACAACGACG TGCCGGGCAA CATGCTGGCC GGCGCTGTCT CCACCTATGT GCGCCGCTAC
GGCGTGGCAC CGGGCCGCAA GCTGGTGCTG TCGACCAACA ACGACCATGC CTACCGGGCT
GCGCTGGACT GGCATGACGC TGGCCTGCAG GTCGTCGCCA TCGCCGACGC CCGCCACAAC
CCACGTGGTT CGCTGGTTGA GGAAGCCCGT GCCAAAGGCA TCCGCATCCT CACTTCCAGC
GCTGTGATTG AGGCCAAAGG CAGCAAGCAT GTCACCGGTG CCCGCGTGGC GGCCATCGAT
GTGCAGGCAC ACAAGGTCAC CAGCCCCGGC GAAACCCTCG AATGCGACCT GATCGCAACC
TCCGGCGGCT ACAGCCCGAT CGTCCACCTG GCCTCGCACC TGGGCGGTCG CCCGGTTTGG
CGTGATGACA TTCTTGGCTT CGTGCCCGGT GATGCGCCGC AAAAGCGCGT GTGCGTGGGT
GGCATCAACG GCGTGTATGC ACTGGGCGAT GTGATTGCCG ATGGTTTCGA AGGCGGCGTG
CGCGCAGCCA CCGAAGCCGG CTTCAAGGCT ACCACCGGCA CGCTGCCAAA GACCGTTGCA
CGCAAGGAAG AGGCCACCGT GGCCCTGTTC CAGGTGCCGC ACGACAAGGG CAGCAAGGGG
CCGAAGCAGT TCGTCGACCA GCAGAACGAT GTGACCGCCG CCGGTATCGA ACTGGCCACC
CGCGAAGGCT TCGAGTCGGT CGAGCACGTC AAGCGCTATA CCGCGCTGGG CTTCGGTACC
GACCAAGGCA AACTGGGCAA CATCAACGGC CTGGCCATCG CCGCCCGTTC GATCGGTATC
ACCATTCCGG AAATGGGCAC CACCATGTTC CGCCCCAACT ACACGCCGGT GACTTTCGGT
GCGGTAGCGG GCCGTCACTG TGGCCACCTG TTCGAGCCCG TGCGCTTCAC TGCCCTGCAT
GCCTGGCACG TGAAGAACGG CGCCGAGTTC GAAGACGTCG GCCAATGGAA GCGCCCTTGG
TACTTCCCCA AGGCCGGTGA AGACATCCAC GCTGCCGTGG CCCGTGAGTG CAAGGCCGTG
CGCGACAGCG TGGGCCTGCT CGACGCCTCG ACCCTGGGCA AGATCGATAT CCAGGGCCCG
GATGCCCGCG AGTTCCTCAA CCGCATCTAC AGCAACGCCT GGACCAAGCT CGATGTGGGC
AAGGCCCGTT ATGGCCTGAT GTGCAAAGAA GACGGCATGG TCTTCGACGA CGGCGTGACC
GCCTGTGTCG GCGACAACCA CTTCTACATG ACCACCACTA CCGGTGGCGC CGCACGCGTG
CTGCAGTGGC TGGAGCTGTA TCACCAGACC GAATGGCCAG AGATGAAGGT GTATTTCACC
TCGGTCACCG ATCACTGGGC CACGCTGACC CTGTCCGGCC CCAACAGCCG CAAGCTGCTC
AGCGAGCTGA CCGACGACAT CGACTTGGAC AAGGACGCCT TCCCGTTCAT GACCTGGAAG
GAAGGCACTG TCGGTGGCGT ACCGGCCCGC GTGTTCCGTA TTTCGTTCAC CGGTGAGCTG
TCGTACGAAG TCAACGTGCA GGCCAACTAC GCCATGGGCG TGCTGGAAAA AGTCATCGAG
GCCGGCAAGA AGTACAACCT GACCCCGTAC GGCACCGAAA CCATGCACGT GCTGCGTGCC
GAGAAGGGCT TCATCATCGT TGGCCAGGAC ACCGACGGCT CGATGACCCC GGACGACCTC
AACATGAGCT GGTGTGTGGG CCGCAACAAG CCGTTCTCGT GGATCGGCCT GCGTGGCATG
AACCGCGAAG ACTGCGTGCG TGAAAACCGC AAGCAGCTGG TGGGCCTCAA GCCTGTGGAC
CCGACCAAGT GGCTGCCCGA AGGCGCTCAG TTGGTGTTCG ACCCCAAGCA GCCGATCCCG
ATGGACATGG TCGGCCACGT CACCTCCAGC TACGCGGCCA ACTCCCTGGG TTATTCGTTT
GCCATGGGTG TGGTCAAAGG CGGCCTGAAA CGCATGGGCG AGCGCGTTTA TTCGCCGCAA
GCCGATGGCA GCGTGATCGA GGCAGAAATC GTGTCTTCGG TGTTCTTCGA TCCGAAGGGT
GAGCGGCAGA ACGTTTGA
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| Protein sequence | MSQTYRLASG GRIDRSKVLN FTFNGKTYQG YAGDSLAAAL LANGVDIVGR SFKYSRPRGI
IAAGTEEPNA ILQIGSSEAT QIPNVRATQQ ALYAGLVATS TNGWPNVNND VMGILGKVGG
SMMPPGFYYK TFMYPKSFWM TYEKYIRKAA GLGRAPLQND PDSYDYMNQH CDVLIVGAGP
AGLAAALAAA RSGARVILAD EQEEFGGSLL DSRETLDGKP AADWVNAVVK ELQSLPEVTL
LPRATVNGYH DHNFLTIHER LTDHLGDRAP IGQVRHRVHR VRAKRVVLAA GAHERPLVYG
NNDVPGNMLA GAVSTYVRRY GVAPGRKLVL STNNDHAYRA ALDWHDAGLQ VVAIADARHN
PRGSLVEEAR AKGIRILTSS AVIEAKGSKH VTGARVAAID VQAHKVTSPG ETLECDLIAT
SGGYSPIVHL ASHLGGRPVW RDDILGFVPG DAPQKRVCVG GINGVYALGD VIADGFEGGV
RAATEAGFKA TTGTLPKTVA RKEEATVALF QVPHDKGSKG PKQFVDQQND VTAAGIELAT
REGFESVEHV KRYTALGFGT DQGKLGNING LAIAARSIGI TIPEMGTTMF RPNYTPVTFG
AVAGRHCGHL FEPVRFTALH AWHVKNGAEF EDVGQWKRPW YFPKAGEDIH AAVARECKAV
RDSVGLLDAS TLGKIDIQGP DAREFLNRIY SNAWTKLDVG KARYGLMCKE DGMVFDDGVT
ACVGDNHFYM TTTTGGAARV LQWLELYHQT EWPEMKVYFT SVTDHWATLT LSGPNSRKLL
SELTDDIDLD KDAFPFMTWK EGTVGGVPAR VFRISFTGEL SYEVNVQANY AMGVLEKVIE
AGKKYNLTPY GTETMHVLRA EKGFIIVGQD TDGSMTPDDL NMSWCVGRNK PFSWIGLRGM
NREDCVRENR KQLVGLKPVD PTKWLPEGAQ LVFDPKQPIP MDMVGHVTSS YAANSLGYSF
AMGVVKGGLK RMGERVYSPQ ADGSVIEAEI VSSVFFDPKG ERQNV
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