| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4866 |
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| Symbol | |
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| ID | 6113856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5373558 |
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| End bp | 5376248 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641624678 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001751711 |
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| Protein GI | 170724023 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.645914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.211732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCC AACCCGATGC CGCCAGCCGT GTGGCGGCCG AGGTCGTCAC GCAGCTTCCC
GTGCCTTCAC GGCTCGGCAT GCTGCGTTTC GAAAGGCTCA ACGAAGCCAC CTGGGCAATG
CTTTACCTGG ACCCGGCCTG CGAACGCCAG TTCGGCCTGC AGGCCTCCGA GCTGTGTGCG
CTGATCGACT CGCCGTATGC CAGCCTGATG GAGCCTGAGG CCCGCTACCG GCTGCATGAC
GAGATCCAGC GGCAACTGAG CACCCGTGGG TATTACCGTG TGCGCTACAC CCTGCATGCA
CAGCCGCGCG CGCTGCGCCT GCTCGAGGCG GGCGAAGCCT ACAAGCAGCA CAACCGCCAG
CTGTTACGCG GTTTTTTGAC GGTACTCGAC GACCAGCCTG AAGACGCTGT CGAAGTGGAC
GCCGACGACC TCGAATCACG TAACAGCCGC CTGCAGCTTG CCCTGCAACT CAACCAGCGC
GCCCAGCAGG AACAGCTGGA ACACCTTGAG CGCGTGCGCA GCCAGCAGGA CCTGATCCTG
CGCCTCGCCC GCCAGCGCTA TAGCGCGGAA AACTCCCTGC TCGAAGCCGC CCAGCTGATT
ACCCGCAGCG CCTGTGAGAT CTACAAGGTG GACTGCGCCA GCATCTGGCA TCTGGAAGAC
CAGCGTCTGG AGCCGATCAG CGCCTGGTTG CGCAATGAGC AAGTGCATCG CCTGCCCGAA
GCGATCGATG CCAGCCGCTT CCCGGATTAT CTGGATGCCC TGCACGCCAG CCGCGCTATC
GATGCCCACA ACGCCAACCA CGATCCGCGT ACCCGTGAAC TGGCCGAAAG CCTGTACGCC
GACAACAATG CCATGCTCGA TGCCAGTATC CGCGTCGATG GCCAGGTGGT TGGCGTGCTG
TGCCTGGAGC AGACCGGCCA GCCGCGGGCC TGGCAGTCGG ACGAAATCGC CTTTGCCGGT
GAGTTGGCCG ACCAGTTCGC CCAGGTCATC ACCAACCATA ACCGACGCAC CGCCGCCAGC
GCCCTGCACT TGTTCCAGCG TGCGGTGGAG CAAAGCGCCA GCGCCTTCCT GCTGGTGAAC
CGCGACGGCG TGGTGGAGTA CGTCAACCCC AGCTTCACCG CGATCACCCA GTACAGCACC
GATGAGGTAC AAGGCCACCA CCTGGCAGAG TTGCCAGCGC TGGAGAACCT CAGCGAACTG
CTGTTCGATA CCCCGTCGAG CCTGGCCATG GGCAACAGCT GGCAGGGCGA ATTCAAAAGC
CGGCGCAAGA ACCTTGAGCC CTACTGGGGC CAGTTGTCGA TTTCCAAGGT GTATGGCGAT
AACCGTGAGC TGACCCATTA CATCGGCATC TACGAAGATG TCACCCAGAC CAAGCTGGCC
CAGCAACGCA TCGAGCGCCT GGCCTACACC GACAACCTGA CCAACCTGGG CAACCGCCCG
GCTTTCATCC GCAGCCTCGA CGAGCGCTTC GCCCGCGATG GCCAGAGCCC GATCTGCCTG
CTGCTGGTGG ACATCGACAA CTTCAAGCGG ATCAACGACA GCCTTGGCCA CCAGACCGGT
GACAAACTGC TGATCAGCCT GGCCCGGCGC CTGCGCAACA GCCTCAGCGT TGGCGGCGTG
CTGGCCCGCT TTGCCAGTAA TGAATTCGCC GTGCTGCTCG ACGACACCAG CCTGGAAGAC
GGCCAGGGCG TCGCCCAGCA ACTCCTGCGC ACCCTCGACA AGCCGATGTT CGTCGACAAC
CAGCTGATCA ACGTGACCGC CTCGGTTGGC CTGGCCTGTG CGCCGCTGCA CGGCAGTGAC
CCGACCACCC TGATGAAAAA TGCAGGCCTG GCCCTGCACA AGGCCAAAGC CAACGGCAAG
CACCAGGTGC AGGTATTCAC CGAAGTGCTC AATGCCGAAG CCAGCTACAA GCTGTTCGTC
GAGAACAACC TGCGCCGCGC TTTGACGCAG AACGAGCTAG AGGTGTTCTA CCAGCCCAAG
CTGTGCCTGC GCAGCGGCCG CCTGCTGGGG CTGGAAGCAC TGCTGCGCTG GAACCACCCA
GAGCGCGGCA TGATCCGCCC GGACCAGTTC ATCAGCGTGG CGGAAGAGAC CGGCCTGATC
ATCCCCATCG GCAAGTGGGT GGTACGCCAG TCGTGCCGCA TGAGCCAGCA ACTGCGCGAG
GCCGGCATGG GCAACCTGCA CGTGGCCATC AACCTGTCGC CCAAGCAGTT CTCCGACCCC
GACCTGGTGG CTTCGATCGC CTCGATCCTC CACGAAGAAG CCCTGCCTGC GCACCTGTTG
GAGCTTGAGC TGACCGAGGG CCTGCTGCTG GAAGCCACCG AGGACACCCA CCGTCAGCTC
GACGAACTGA AGGCATTGGG CCTGACCCTG GCCATGGATG ACTTCGGCAC CGGTTATTCT
TCGCTGAGCT ACCTGAAGAA ATTCCCGATC GACATCATCA AGATCGACCG CAGCTTCATC
AACGAAATCC CCGACAACCA GGACGACATG GAGATCACCT CGGCGGTGGT GGCCATGGCC
CACAACCTCA AGCTCAAGGT CGTGGCAGAA GGGATCGAGA CGCCCGAGCA GCTGGCCTTC
CTGCGCCGGC ACCGTTGCGA TGTGGGCCAG GGGTATCTGT TCGACCGGCC GATCCCGGGG
CGAGAGCTGG CCGAAAGACT CAAGCGCTAT CCGCGCGGTC CAATGGCCTG A
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| Protein sequence | MKSQPDAASR VAAEVVTQLP VPSRLGMLRF ERLNEATWAM LYLDPACERQ FGLQASELCA
LIDSPYASLM EPEARYRLHD EIQRQLSTRG YYRVRYTLHA QPRALRLLEA GEAYKQHNRQ
LLRGFLTVLD DQPEDAVEVD ADDLESRNSR LQLALQLNQR AQQEQLEHLE RVRSQQDLIL
RLARQRYSAE NSLLEAAQLI TRSACEIYKV DCASIWHLED QRLEPISAWL RNEQVHRLPE
AIDASRFPDY LDALHASRAI DAHNANHDPR TRELAESLYA DNNAMLDASI RVDGQVVGVL
CLEQTGQPRA WQSDEIAFAG ELADQFAQVI TNHNRRTAAS ALHLFQRAVE QSASAFLLVN
RDGVVEYVNP SFTAITQYST DEVQGHHLAE LPALENLSEL LFDTPSSLAM GNSWQGEFKS
RRKNLEPYWG QLSISKVYGD NRELTHYIGI YEDVTQTKLA QQRIERLAYT DNLTNLGNRP
AFIRSLDERF ARDGQSPICL LLVDIDNFKR INDSLGHQTG DKLLISLARR LRNSLSVGGV
LARFASNEFA VLLDDTSLED GQGVAQQLLR TLDKPMFVDN QLINVTASVG LACAPLHGSD
PTTLMKNAGL ALHKAKANGK HQVQVFTEVL NAEASYKLFV ENNLRRALTQ NELEVFYQPK
LCLRSGRLLG LEALLRWNHP ERGMIRPDQF ISVAEETGLI IPIGKWVVRQ SCRMSQQLRE
AGMGNLHVAI NLSPKQFSDP DLVASIASIL HEEALPAHLL ELELTEGLLL EATEDTHRQL
DELKALGLTL AMDDFGTGYS SLSYLKKFPI DIIKIDRSFI NEIPDNQDDM EITSAVVAMA
HNLKLKVVAE GIETPEQLAF LRRHRCDVGQ GYLFDRPIPG RELAERLKRY PRGPMA
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