Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4816 |
Symbol | |
ID | 6113805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 5309519 |
End bp | 5313262 |
Gene Length | 3744 bp |
Protein Length | 1247 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641624627 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001751661 |
Protein GI | 170723973 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.201907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCAA TGCCGGCCAT TCTGTTGCTG CTCCTGATCC TGTGGAACAC AACGGCCGGC GCCCTGACCC TGACAGACGA GGAAAAAACC TGGCTCACTG CCCACCCGCA GTTGAAGCTG GGCGTCGACG CCTCCTGGCC ACCGTTCGAA TTTCGTGACC AGGAAGGCCG GTACCAGGGA TTGGCCGCCG ATTACATCGC CATGCTCCAG GACCGTCTGG GCGTGGCATT CAAGCCGGTC GAACCCAGCA CCTGGACCGA GGTACTTGAA CAGGCGCGCG AAAGCCGCAT CGACCTTTTA CCCGGCGTCA TGTCAACCCC CGAACGCCAA GGCTACCTGG CTTTCACGCG CCCTTATCTG GACTTCCCCA TCGTCATCCT GGCCCATGAA GGCGGCCAGC AACCCCGCAC ACTGAAGGAC CTGTACGGCC TGAAAATCGC TGTGGTGGAG AATTACGCTC CACACGAACT GCTGCGTACC CACCATCCAG ATCTCAACCT GGTCGCCATG CCCAATGTCA GCTCGACCTT GCAGGCACTG GCCACCGATG AGGTGGATGC CGTAGTCGGT GATCTCGCCT CGAGCATCTG GAGCCTGCGC CAGCTCAAGC TGGACGGCCT TTATGTCAGC GGCGAAACGC CCTATCGCTA TCAGCTGGCC ATGGCCGCAC CGCGCGACAA GAAGGTTCTG GTCGGCATCC TCGACAAGGT CATGGCCGAC ATGTCGACTG ACGAGATCAG GCAGATCCAG CAACGCTGGG TCGGCAATGT GGTCGATCAA CGCACCTTCT GGCACGACAT GCTCATGTAC GGCCTGCCCG GCGTCCTTTT GCTGATCGCC ATCCTGGCCG TGGTGATCCG CATCAACCGC CGCCTCAGCT CGGAAATATC CAGGCGCATC GCACTGGAAC AGGAACTGCG CAGCAGCGAG TACCACTATC GTGGGCTGAT CGAAAGCCTC TCAGCCATCG CCTGGGAAGC TGACGCCAAT GATTTCACCT ATAGCTACGT CTCACCCCAT GCCGAAGACC TGCTTGGCTA CCCCTTGCAC GAATGGCTCA AACCAGGCTT CTGGCGCACC ATTTTGCACC CGGAGGATGC ACTCTGGGCC CAAGCCTACT GCGAAAGCGA AACAGCAGCC GGGCGCGACC ATAGCCTCGA TTACAGGGTG ATGCGTGCCG ATGGCCATTC ACTCTGGGTA CGTAATATCG TCAGCATGAT CGAGCATGGC CACCGCCCGG TGATGCGCGG CCTGATGATC GACATCAGCG AAACCAAGCG TACCGAAGAC GCCTTGCGCC TGTCGGAGCA GAAGTTCGCT TCGGTATTCC AGCAATGCCC CGACATCCTG TTGATTGCAC GCCACAGTGA TGGGTGCCTG CTAGAGGTCA ACGAAGCTTT CGAGGAGCAG ATCGGTCTGA CCCCGGGTCA AGTAGTGGGC CGCACCGCCA CAGAGCTGAA CCTGTGGGGC GCCCAAGGCG CCGGGCCCTT GTTGCTCGAG CGCCTGCACC AAGGAGGTAT CCGCAACCTG GAAATGAGCT TCCGGCGCAG CAATGGCGAA TTATTCACAG GCCTGACCTC TGCCGAAACC TTCGAGCTGG ATGGAACGCT GGCCTTCGTA GTCGCGGTTC GCGACATCAG CCAGCTGAAA GAAACCCAGC AGCAACTGCA AACCTCCGAA GAGAAATTTG CCAAAGCCTT CCACGCGTCT CCGGACGGCC TGCTGCTGTC GCGCCAGAGC GATGGCTTGC TAATCGAGGT CAACGAGGGT TTCTGCAGAC TGACCGGCTA CGACCTCGAC CCTGCCCTGG ACCAGACGTC TTTCGACCTG GGTATCTGGG TCGACCTCAA TGAACGTAAA CGCCTGATCG CTCAACTCGC CCGCGATGGT TTCGTGCGTG ATTTCAGCTG CCATATCCGC CGCAGCGACG GGCAGATTCG CCTTTGCGAG CTGTCCGCAC GGCCACTGCC GATTGCCGGC GTCGACTGCA TGCTGACCAT CGCCCGCGAC ATCACCGAGC GCCATCTGAT GCAGGAAAAA CTGCAACTGG CCGCCACCGT GTTCGAAAAC ACCGCCGAAG GCGTTCTGAT CACCGATATC GACCAGCGCA TCAGCGCGGT AAACCGTGCG TTCAGCGAAA TCACCGGCTA CAACGAGACC GAAGCCCTGG GCCAGACCCC GCGCCTGCTT GCCTCCGGCC AGCATGACAG CGCCTTCTAC GCCGCCATGT GGCATCAGCT AACAGCCGAA GGCCATTGGC AGGGCGAGAT CTACAACAAA CGCAAAAATG GCGAACTTTA CCCGGGCTGG CTGACTATCA GCGCTGTGCG CAATAGCGAC CGCGAGATCA CCCACTTTGT CGCCGTGTTC GCCGACATTT CCAGCCTCAA GCACGCTCAG GCCAAACTCG ACTACCAGGC TCACCACGAC CCGCTCACCG GCCTGCCCAA CCGGGCGCTG TTCGAGAACC GCCTGCAGGC CGCGCTCATC TGCCCGCAAG CCTCCAACCG CCAAGGCGCG GTGCTGTTCC TTGACCTTGA TCGCTTCAAG CACATCAACG ACAGCCTTGG CCATCCGGTC GGCGACCTGC TACTCAAGGG CATCGCCCAG CGTCTCAAGG AGCAAGTGCG CGACGTCGAT ACCGTGGCGC GCCTGGGTGG CGACGAGTTC ATCATCCTGC TGCCCGGCCT GCACAAACCC AGTGACGCCA GCGCCATCGC CAACAAACTG CTGTCATGCT TCAGCGCCCC CTTCCAGGCA GGCGAACACG AGTTTTTCAC CAGCGCGAGT ATCGGCATCA GTCTCTATCC CCAGGACGGT ACCGACGTCG CCACGCTGAT CCGCAACGCC GACGCCGCCA TGTACCGCTC CAAGGCCAAA GGCCGCAACC GGGTCGAAGC CTACACCCGT GACCTCACCG CCCAGGCCAG CGAACGTATT GCCCTGGAGC ACGAGCTGCG CCGCGCCATA GAACGCAACG AAATGAGCCT GTGCTACCAG CCCAAGTTCA GTCTCAAGAC CCAGACCCTG GTTGGCGCCG AAGCACTGAT ACGTTGGAGC CACCCCGCCT TCGGCGAGGT GCCGCCAGAG CACTTCATCC ACCTTGCCGA AGAGAATGGC ACCATCCTGC AGCTCGGCGA CTGGGTACTG GAGCAGGCCT GCCGGCAGAT GCACCACTGG AAGAAGCACT ACCAGGCCTT CGGCCCGCTG TCGATAAACC TCGCCGGTGC GCAGCTGCGC CATCATGGCC TGGCCAAGCG CATCGAGCAG TTGCTCAAGA CCTACCAACT GAAGGCGGGC GACCTGCAGC TGGAAATTAC CGAAAACTTC ATCATGAGCC AGGCCGAAGA AGCCTTGGCC GTGCTGCACC AGCTAAAGCA ACTGGGTGTG CAATTGGCGA TCGATGATTT CGGCACCGGA TACTCATCCC TGAGCTACCT CAAGCGCCTG CCACTGGACA TCCTCAAGAT CGACAAGTCG TTCATCCGCG GTTTGCCGGA CGACCCGCAC GATGCAGCCA TCGCCCGCGC CATCATCGCG CTGGGGCGCA GCATGCAGTT GACCATCATT GCCGAAGGGG TGGAGAACCA GGCGCAGCAG CGGTTCCTGG CTGCCGAAGG TTGTGAACAG ATCCAGGGCT ATATCGTCAG CCTGCCGCTG CCACCAGATG ATTTTGCAGC GGCGTTTCTT CGCATAGCAC TAACCGATCT TTCGGATGGC ACGCTTTCGA AACCCTCGTT ATAA
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Protein sequence | MPPMPAILLL LLILWNTTAG ALTLTDEEKT WLTAHPQLKL GVDASWPPFE FRDQEGRYQG LAADYIAMLQ DRLGVAFKPV EPSTWTEVLE QARESRIDLL PGVMSTPERQ GYLAFTRPYL DFPIVILAHE GGQQPRTLKD LYGLKIAVVE NYAPHELLRT HHPDLNLVAM PNVSSTLQAL ATDEVDAVVG DLASSIWSLR QLKLDGLYVS GETPYRYQLA MAAPRDKKVL VGILDKVMAD MSTDEIRQIQ QRWVGNVVDQ RTFWHDMLMY GLPGVLLLIA ILAVVIRINR RLSSEISRRI ALEQELRSSE YHYRGLIESL SAIAWEADAN DFTYSYVSPH AEDLLGYPLH EWLKPGFWRT ILHPEDALWA QAYCESETAA GRDHSLDYRV MRADGHSLWV RNIVSMIEHG HRPVMRGLMI DISETKRTED ALRLSEQKFA SVFQQCPDIL LIARHSDGCL LEVNEAFEEQ IGLTPGQVVG RTATELNLWG AQGAGPLLLE RLHQGGIRNL EMSFRRSNGE LFTGLTSAET FELDGTLAFV VAVRDISQLK ETQQQLQTSE EKFAKAFHAS PDGLLLSRQS DGLLIEVNEG FCRLTGYDLD PALDQTSFDL GIWVDLNERK RLIAQLARDG FVRDFSCHIR RSDGQIRLCE LSARPLPIAG VDCMLTIARD ITERHLMQEK LQLAATVFEN TAEGVLITDI DQRISAVNRA FSEITGYNET EALGQTPRLL ASGQHDSAFY AAMWHQLTAE GHWQGEIYNK RKNGELYPGW LTISAVRNSD REITHFVAVF ADISSLKHAQ AKLDYQAHHD PLTGLPNRAL FENRLQAALI CPQASNRQGA VLFLDLDRFK HINDSLGHPV GDLLLKGIAQ RLKEQVRDVD TVARLGGDEF IILLPGLHKP SDASAIANKL LSCFSAPFQA GEHEFFTSAS IGISLYPQDG TDVATLIRNA DAAMYRSKAK GRNRVEAYTR DLTAQASERI ALEHELRRAI ERNEMSLCYQ PKFSLKTQTL VGAEALIRWS HPAFGEVPPE HFIHLAEENG TILQLGDWVL EQACRQMHHW KKHYQAFGPL SINLAGAQLR HHGLAKRIEQ LLKTYQLKAG DLQLEITENF IMSQAEEALA VLHQLKQLGV QLAIDDFGTG YSSLSYLKRL PLDILKIDKS FIRGLPDDPH DAAIARAIIA LGRSMQLTII AEGVENQAQQ RFLAAEGCEQ IQGYIVSLPL PPDDFAAAFL RIALTDLSDG TLSKPSL
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