Gene PputW619_4816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4816 
Symbol 
ID6113805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp5309519 
End bp5313262 
Gene Length3744 bp 
Protein Length1247 aa 
Translation table11 
GC content61% 
IMG OID641624627 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001751661 
Protein GI170723973 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.201907 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCCAA TGCCGGCCAT TCTGTTGCTG CTCCTGATCC TGTGGAACAC AACGGCCGGC 
GCCCTGACCC TGACAGACGA GGAAAAAACC TGGCTCACTG CCCACCCGCA GTTGAAGCTG
GGCGTCGACG CCTCCTGGCC ACCGTTCGAA TTTCGTGACC AGGAAGGCCG GTACCAGGGA
TTGGCCGCCG ATTACATCGC CATGCTCCAG GACCGTCTGG GCGTGGCATT CAAGCCGGTC
GAACCCAGCA CCTGGACCGA GGTACTTGAA CAGGCGCGCG AAAGCCGCAT CGACCTTTTA
CCCGGCGTCA TGTCAACCCC CGAACGCCAA GGCTACCTGG CTTTCACGCG CCCTTATCTG
GACTTCCCCA TCGTCATCCT GGCCCATGAA GGCGGCCAGC AACCCCGCAC ACTGAAGGAC
CTGTACGGCC TGAAAATCGC TGTGGTGGAG AATTACGCTC CACACGAACT GCTGCGTACC
CACCATCCAG ATCTCAACCT GGTCGCCATG CCCAATGTCA GCTCGACCTT GCAGGCACTG
GCCACCGATG AGGTGGATGC CGTAGTCGGT GATCTCGCCT CGAGCATCTG GAGCCTGCGC
CAGCTCAAGC TGGACGGCCT TTATGTCAGC GGCGAAACGC CCTATCGCTA TCAGCTGGCC
ATGGCCGCAC CGCGCGACAA GAAGGTTCTG GTCGGCATCC TCGACAAGGT CATGGCCGAC
ATGTCGACTG ACGAGATCAG GCAGATCCAG CAACGCTGGG TCGGCAATGT GGTCGATCAA
CGCACCTTCT GGCACGACAT GCTCATGTAC GGCCTGCCCG GCGTCCTTTT GCTGATCGCC
ATCCTGGCCG TGGTGATCCG CATCAACCGC CGCCTCAGCT CGGAAATATC CAGGCGCATC
GCACTGGAAC AGGAACTGCG CAGCAGCGAG TACCACTATC GTGGGCTGAT CGAAAGCCTC
TCAGCCATCG CCTGGGAAGC TGACGCCAAT GATTTCACCT ATAGCTACGT CTCACCCCAT
GCCGAAGACC TGCTTGGCTA CCCCTTGCAC GAATGGCTCA AACCAGGCTT CTGGCGCACC
ATTTTGCACC CGGAGGATGC ACTCTGGGCC CAAGCCTACT GCGAAAGCGA AACAGCAGCC
GGGCGCGACC ATAGCCTCGA TTACAGGGTG ATGCGTGCCG ATGGCCATTC ACTCTGGGTA
CGTAATATCG TCAGCATGAT CGAGCATGGC CACCGCCCGG TGATGCGCGG CCTGATGATC
GACATCAGCG AAACCAAGCG TACCGAAGAC GCCTTGCGCC TGTCGGAGCA GAAGTTCGCT
TCGGTATTCC AGCAATGCCC CGACATCCTG TTGATTGCAC GCCACAGTGA TGGGTGCCTG
CTAGAGGTCA ACGAAGCTTT CGAGGAGCAG ATCGGTCTGA CCCCGGGTCA AGTAGTGGGC
CGCACCGCCA CAGAGCTGAA CCTGTGGGGC GCCCAAGGCG CCGGGCCCTT GTTGCTCGAG
CGCCTGCACC AAGGAGGTAT CCGCAACCTG GAAATGAGCT TCCGGCGCAG CAATGGCGAA
TTATTCACAG GCCTGACCTC TGCCGAAACC TTCGAGCTGG ATGGAACGCT GGCCTTCGTA
GTCGCGGTTC GCGACATCAG CCAGCTGAAA GAAACCCAGC AGCAACTGCA AACCTCCGAA
GAGAAATTTG CCAAAGCCTT CCACGCGTCT CCGGACGGCC TGCTGCTGTC GCGCCAGAGC
GATGGCTTGC TAATCGAGGT CAACGAGGGT TTCTGCAGAC TGACCGGCTA CGACCTCGAC
CCTGCCCTGG ACCAGACGTC TTTCGACCTG GGTATCTGGG TCGACCTCAA TGAACGTAAA
CGCCTGATCG CTCAACTCGC CCGCGATGGT TTCGTGCGTG ATTTCAGCTG CCATATCCGC
CGCAGCGACG GGCAGATTCG CCTTTGCGAG CTGTCCGCAC GGCCACTGCC GATTGCCGGC
GTCGACTGCA TGCTGACCAT CGCCCGCGAC ATCACCGAGC GCCATCTGAT GCAGGAAAAA
CTGCAACTGG CCGCCACCGT GTTCGAAAAC ACCGCCGAAG GCGTTCTGAT CACCGATATC
GACCAGCGCA TCAGCGCGGT AAACCGTGCG TTCAGCGAAA TCACCGGCTA CAACGAGACC
GAAGCCCTGG GCCAGACCCC GCGCCTGCTT GCCTCCGGCC AGCATGACAG CGCCTTCTAC
GCCGCCATGT GGCATCAGCT AACAGCCGAA GGCCATTGGC AGGGCGAGAT CTACAACAAA
CGCAAAAATG GCGAACTTTA CCCGGGCTGG CTGACTATCA GCGCTGTGCG CAATAGCGAC
CGCGAGATCA CCCACTTTGT CGCCGTGTTC GCCGACATTT CCAGCCTCAA GCACGCTCAG
GCCAAACTCG ACTACCAGGC TCACCACGAC CCGCTCACCG GCCTGCCCAA CCGGGCGCTG
TTCGAGAACC GCCTGCAGGC CGCGCTCATC TGCCCGCAAG CCTCCAACCG CCAAGGCGCG
GTGCTGTTCC TTGACCTTGA TCGCTTCAAG CACATCAACG ACAGCCTTGG CCATCCGGTC
GGCGACCTGC TACTCAAGGG CATCGCCCAG CGTCTCAAGG AGCAAGTGCG CGACGTCGAT
ACCGTGGCGC GCCTGGGTGG CGACGAGTTC ATCATCCTGC TGCCCGGCCT GCACAAACCC
AGTGACGCCA GCGCCATCGC CAACAAACTG CTGTCATGCT TCAGCGCCCC CTTCCAGGCA
GGCGAACACG AGTTTTTCAC CAGCGCGAGT ATCGGCATCA GTCTCTATCC CCAGGACGGT
ACCGACGTCG CCACGCTGAT CCGCAACGCC GACGCCGCCA TGTACCGCTC CAAGGCCAAA
GGCCGCAACC GGGTCGAAGC CTACACCCGT GACCTCACCG CCCAGGCCAG CGAACGTATT
GCCCTGGAGC ACGAGCTGCG CCGCGCCATA GAACGCAACG AAATGAGCCT GTGCTACCAG
CCCAAGTTCA GTCTCAAGAC CCAGACCCTG GTTGGCGCCG AAGCACTGAT ACGTTGGAGC
CACCCCGCCT TCGGCGAGGT GCCGCCAGAG CACTTCATCC ACCTTGCCGA AGAGAATGGC
ACCATCCTGC AGCTCGGCGA CTGGGTACTG GAGCAGGCCT GCCGGCAGAT GCACCACTGG
AAGAAGCACT ACCAGGCCTT CGGCCCGCTG TCGATAAACC TCGCCGGTGC GCAGCTGCGC
CATCATGGCC TGGCCAAGCG CATCGAGCAG TTGCTCAAGA CCTACCAACT GAAGGCGGGC
GACCTGCAGC TGGAAATTAC CGAAAACTTC ATCATGAGCC AGGCCGAAGA AGCCTTGGCC
GTGCTGCACC AGCTAAAGCA ACTGGGTGTG CAATTGGCGA TCGATGATTT CGGCACCGGA
TACTCATCCC TGAGCTACCT CAAGCGCCTG CCACTGGACA TCCTCAAGAT CGACAAGTCG
TTCATCCGCG GTTTGCCGGA CGACCCGCAC GATGCAGCCA TCGCCCGCGC CATCATCGCG
CTGGGGCGCA GCATGCAGTT GACCATCATT GCCGAAGGGG TGGAGAACCA GGCGCAGCAG
CGGTTCCTGG CTGCCGAAGG TTGTGAACAG ATCCAGGGCT ATATCGTCAG CCTGCCGCTG
CCACCAGATG ATTTTGCAGC GGCGTTTCTT CGCATAGCAC TAACCGATCT TTCGGATGGC
ACGCTTTCGA AACCCTCGTT ATAA
 
Protein sequence
MPPMPAILLL LLILWNTTAG ALTLTDEEKT WLTAHPQLKL GVDASWPPFE FRDQEGRYQG 
LAADYIAMLQ DRLGVAFKPV EPSTWTEVLE QARESRIDLL PGVMSTPERQ GYLAFTRPYL
DFPIVILAHE GGQQPRTLKD LYGLKIAVVE NYAPHELLRT HHPDLNLVAM PNVSSTLQAL
ATDEVDAVVG DLASSIWSLR QLKLDGLYVS GETPYRYQLA MAAPRDKKVL VGILDKVMAD
MSTDEIRQIQ QRWVGNVVDQ RTFWHDMLMY GLPGVLLLIA ILAVVIRINR RLSSEISRRI
ALEQELRSSE YHYRGLIESL SAIAWEADAN DFTYSYVSPH AEDLLGYPLH EWLKPGFWRT
ILHPEDALWA QAYCESETAA GRDHSLDYRV MRADGHSLWV RNIVSMIEHG HRPVMRGLMI
DISETKRTED ALRLSEQKFA SVFQQCPDIL LIARHSDGCL LEVNEAFEEQ IGLTPGQVVG
RTATELNLWG AQGAGPLLLE RLHQGGIRNL EMSFRRSNGE LFTGLTSAET FELDGTLAFV
VAVRDISQLK ETQQQLQTSE EKFAKAFHAS PDGLLLSRQS DGLLIEVNEG FCRLTGYDLD
PALDQTSFDL GIWVDLNERK RLIAQLARDG FVRDFSCHIR RSDGQIRLCE LSARPLPIAG
VDCMLTIARD ITERHLMQEK LQLAATVFEN TAEGVLITDI DQRISAVNRA FSEITGYNET
EALGQTPRLL ASGQHDSAFY AAMWHQLTAE GHWQGEIYNK RKNGELYPGW LTISAVRNSD
REITHFVAVF ADISSLKHAQ AKLDYQAHHD PLTGLPNRAL FENRLQAALI CPQASNRQGA
VLFLDLDRFK HINDSLGHPV GDLLLKGIAQ RLKEQVRDVD TVARLGGDEF IILLPGLHKP
SDASAIANKL LSCFSAPFQA GEHEFFTSAS IGISLYPQDG TDVATLIRNA DAAMYRSKAK
GRNRVEAYTR DLTAQASERI ALEHELRRAI ERNEMSLCYQ PKFSLKTQTL VGAEALIRWS
HPAFGEVPPE HFIHLAEENG TILQLGDWVL EQACRQMHHW KKHYQAFGPL SINLAGAQLR
HHGLAKRIEQ LLKTYQLKAG DLQLEITENF IMSQAEEALA VLHQLKQLGV QLAIDDFGTG
YSSLSYLKRL PLDILKIDKS FIRGLPDDPH DAAIARAIIA LGRSMQLTII AEGVENQAQQ
RFLAAEGCEQ IQGYIVSLPL PPDDFAAAFL RIALTDLSDG TLSKPSL