| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4790 |
|---|
| Symbol | |
|---|
| ID | 6113779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5278959 |
|---|
| End bp | 5279993 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641624601 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001751635 |
|---|
| Protein GI | 170723947 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGC AGCTGAAACT GACCGCCCTG GCCCTTGGCC TGTTCGCCGC CGGCCAGGCC
ATGGCGGCAG ACCTGACCGT AGTGTCCTTC GGCGGCGCCA ACAAGGCGGC CCAGGTCAAA
GCGTTCTACG AGCCATGGGA GAAGGCCGGC AAGGGTAAGA TCGTCGCTGG CGAGTACAAC
GGTGAAATGG CCAAGATCAA AGCCATGGTC GACACCAACA GCGTGTCCTG GAACCTGGTG
GAGGTGGAGT CGCCAGAGCT GGCCCGTGGT TGCGATGAAG GCATGTTCGA GGAGCTCGAC
CCGGCTCTGT TCGGCAACGA AAGCGATTAT GTGAAGGGCG CCATCCAACC GTGCGGCGTG
GGCTTCTTCG TTTGGTCCAC GGTGCTGGCC TACAACGCTG ACAAGCTCAA GACAGCCCCG
ACCAGCTGGG CCGATTTCTG GGACACGAAG AAATTCCCGG GCAAGCGCGG CCTGCGCAAG
GGCGCGAAGT ACACCCTGGA GTTCGCCCTG ATGGCCGACG GCGTTGCGCC CAAGGATGTG
TACCAGGTGC TGGCCACCAA GGAAGGCGTG GACCGCGCCT TCAAGAAACT CGACGAACTC
AAGCCGAGCA TCCAGTGGTG GGAAGCGGGC GCCCAGCCGC CGCAGTACCT GGCCTCGGGT
GATGTGGTCA TGAGCTCGGC CTACAACGGG CGCATCGCTG CGGTACAGAA AGAGAGCAAC
CTCAAGGTGG TGTGGAACGG TGGCATCTAC GACTTCGACG CTTGGGCCAT CCCGAAAGGG
GCCAAGAATG TCGAGGAAGC GAAGAAATTC ATCGCTTATA CCGTTCAGCC TGAGCAGCAG
AAGACCTACT CCGAGAACAT CGCCTACGGC CCGGCCAACT CCAAGGCCGT ACCGCTGCTG
GCGGACGCGG TGAAGAAGGA CATGCCGACC ACGCCTGAAA ACATCGCCAA CCAGGTGCAG
ATCGATGTGG CCTTCTGGGC TGACAACAGC GAGCAACTGG AGCAACGCTT CAACGCCTGG
GCGGCGAAGA AGTAA
|
|---|
| Protein sequence | MRKQLKLTAL ALGLFAAGQA MAADLTVVSF GGANKAAQVK AFYEPWEKAG KGKIVAGEYN
GEMAKIKAMV DTNSVSWNLV EVESPELARG CDEGMFEELD PALFGNESDY VKGAIQPCGV
GFFVWSTVLA YNADKLKTAP TSWADFWDTK KFPGKRGLRK GAKYTLEFAL MADGVAPKDV
YQVLATKEGV DRAFKKLDEL KPSIQWWEAG AQPPQYLASG DVVMSSAYNG RIAAVQKESN
LKVVWNGGIY DFDAWAIPKG AKNVEEAKKF IAYTVQPEQQ KTYSENIAYG PANSKAVPLL
ADAVKKDMPT TPENIANQVQ IDVAFWADNS EQLEQRFNAW AAKK
|
|---|
| |