| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4786 |
|---|
| Symbol | |
|---|
| ID | 6113775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5275155 |
|---|
| End bp | 5275973 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641624597 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_001751631 |
|---|
| Protein GI | 170723943 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.602175 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCT TCGAGCAGCT GTTCCCCGGG ACGCTGCCCA GGCTGGTGAT GTTCGATCTG
GACGGTACCC TGATCGATTC AGTCCCCGAC CTGGCCGCAG CCGTTGACCG CATGCTGCTC
GAACTTGGCC GTCCGGCCGC CGGCCTTGAC GCCGTGCGGC ACTGGGTCGG CAACGGCGCA
CCGGTGCTGG TGCGCCGCGC ACTTGCCGGC GGCCTGGACC ACGCGACCGT AGACGATGAG
CTGGCCGAGC GCGGCCTTGC ACTGTTCATG GAGGCGTACG CCGAAAGCCA TGATCTAACG
GTTGTATACC CTGGTGTGCA CGACACCTTG CGCTGGCTGC GCAAGCAGGG CGTGGAGATG
GCGCTGATCA CCAACAAGCC TGAACGCTTC GTCGCACCGT TGCTCGACCA GATGAAGATC
GGCCGTTATT TCCGCTGGAT CATCGGCGGC GATACCCTGC CACAGAAGAA GCCCGATCCT
GCTGCGTTGC TGTTCGTCAT GAAAATGGCC GGCGTGAAGC CCGGCCAGGC GCTGTTTGTG
GGGGACTCGC GCAGTGATGT GCTGGCGGCC AAGGCTGCCG GCGTGCAGTG CGTTGGGCTG
AGCTATGGCT ATAACCACGG CCGGCCGATC GATGAGGAAG CGCCCAGCCT GGTCATAGGC
GACCTGCGCC TGCTGCTGCC TGGTTGCGTA GTCACCGACA CTGGGATAAC GTTGGCGGAC
CTTCAAGCCT CACAAGACAG AGAGCCCACC GTGGTGGTTA CCGGCAAATT CTGGATGAAA
GTCATCAAGG CCCTGGCCCG TTGGCGTTGG CGCGCCTGA
|
|---|
| Protein sequence | MSGFEQLFPG TLPRLVMFDL DGTLIDSVPD LAAAVDRMLL ELGRPAAGLD AVRHWVGNGA
PVLVRRALAG GLDHATVDDE LAERGLALFM EAYAESHDLT VVYPGVHDTL RWLRKQGVEM
ALITNKPERF VAPLLDQMKI GRYFRWIIGG DTLPQKKPDP AALLFVMKMA GVKPGQALFV
GDSRSDVLAA KAAGVQCVGL SYGYNHGRPI DEEAPSLVIG DLRLLLPGCV VTDTGITLAD
LQASQDREPT VVVTGKFWMK VIKALARWRW RA
|
|---|
| |