| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4725 |
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| Symbol | rpsD |
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| ID | 6113707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 5218157 |
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| End bp | 5218777 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641624529 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001751570 |
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| Protein GI | 170723882 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.766159 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.270309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACGTT ACATTGGTCC AAAATGCAAA CTGTCTCGTC GTGAAGGCAC CGACCTGTTC
CTGAAGAGCG GCGTTCGCGC TCTGGAATCG AAGTGCAACA TCGAAGCAGC CCCAGGTATC
CACGGCCAGC GCCGTGGCCG TCAGTCCGAC TACGGTACCC AGCTGCGCGA GAAACAAAAA
GTTCGTCGTA TCTACGGTGT TCTGGAGCGT CAGTTCCGCG GTTACTACCA GGCTGCTGCC
TCGAAAAAAG GCGCAACCGG TGAGAACCTG CTGCAACTGC TCGAGTGCCG TCTGGATAAC
GTCGTCTACC GTATGGGCTT CGGCTCGACT CGTTCCGAGT CCCGTCAGCT GGTTTCGCAC
AAAGCGATCA GCGTCAACGG TAAGACTGTA AACATTCCAT CCTACCAAGT TCGTCCGGGT
GACGTGGTCG CGGTTCGCGA GAAGTCGTCG AACCAGCTGC GCATTGTTCA AGCCCTTGAA
CTGTGCGCCC AGCGTGGCCG CGTTGAGTGG GTAGACGTAG ATTCCGCTAA GAAGTCGGGC
GTTTTCAAGA ACGTTCCTGC TCGCGGCGAC CTGTCTGCCG ACATCAACGA AAACCTGATT
GTCGAGCTCT ACTCCAAGTA A
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| Protein sequence | MARYIGPKCK LSRREGTDLF LKSGVRALES KCNIEAAPGI HGQRRGRQSD YGTQLREKQK
VRRIYGVLER QFRGYYQAAA SKKGATGENL LQLLECRLDN VVYRMGFGST RSESRQLVSH
KAISVNGKTV NIPSYQVRPG DVVAVREKSS NQLRIVQALE LCAQRGRVEW VDVDSAKKSG
VFKNVPARGD LSADINENLI VELYSK
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