| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4715 |
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| Symbol | |
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| ID | 6113697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5206994 |
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| End bp | 5208427 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641624520 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001751561 |
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| Protein GI | 170723873 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.133912 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGCA AACTCTCACT GGCGATTGCC GTGTCTTGTG CGTCCAACGG AGTGGCCTGG
GCAGCGGATG TGCCCATGAC GGTTAAGACT GACCTGGTCA GCGTCTACCA GGAAGCGGTC
GACAACAACG CCGATCTTGC CGCCGCTCGC GCCGATTATG GCGCGCGCCG CGAGGTGGTG
CCCCAGGCCC GCGCCGGCCT GCTGCCCAAC CTGTCGGCAG GTGCCGAAAT GATGAACACC
CGCACCAAGC TCGACGAACC CTCGATCACC TCCAACCGAA GCGGCAGCGC CTGGAGCGCC
ACCCTGGCGC AACCTGTCTT CCGTGCCGAT CGCTGGTTCC AGTTGCAGGC CGCCGAAGCT
GTCAATGAGC AGGCAGCGCT GGAGTTGTCC GCCACCGAAC AGAATCTGAT CCTGCAGACC
GCGCAAAGCT ATTTTGCCGT GCTGCGGGCC CAGGATAACC TTGCAGCCAC CAAGGCCGAA
GAATCGGCCT TCAAGCGCCA ACTCGATCAG TCCAACGAAC GTTTCGATGT CGGCCTGTCC
GACAAGACCG ACGTGCTGCA GTCCCAGGCC AGCTATGACA CCGCCCGGGC CAACCGGATC
ATTGCCGAAC GCCAGGTGCA GGATGCCTTC GAGGCCTTGG TGACCCTCAC CAACCGCGAA
TACACGTCGA TCCAGGGCGT TGTTCATACC TTGCCGATAC AGGTGCCCAC GCCCAACGAT
GCCAAGGCCT GGGTCGAGAC TGCTGGGCGG CAGAACCTCA ACCTGCTGGC AACCAACTAC
GCAGTCGATG CCGCCGAAGA AACCCTGCGC CAGCGCAAAG CCGGCCACGC CCCGACCCTG
GATGCGGTAG CCAAGTACCA GAAAGGCGAC AACGACAGCC TGGGCTTCAC CAACCCTTCG
CAGTTGGGCG TGCGCTATAG CGGTGACGTG GAGCAGACCA GCATCGGCCT GCAACTGAAC
ATTCCAATCT ACAGCGGCGG CCTGACCAGC TCGCAGGTAC GCGAGGCATA CCAGCGCCTT
AGCCAGAGCG AGCAACAACG CGAGAGCCTG CGCCGCCAAG TGGTGGAGAA CACGCGCAAC
CTGCATCGTG CCGTGAATAC CGATGTGGAG CAGGTGCAAG CGCGCAAGCA GTCGATCATT
TCCAACCAGA GCGCGCTGGA AGCTACCGAG ATCGGTTATC AGGTCGGCAC CCGCAATATC
GTCGACGTGC TCGATGCCCA GCGCCAGCTG TACACCTCGG TTCGCGACTA CAACAACAGC
CGGTACGACT ACATTCTCGA CAACCTGAGC CTGAAGCAGG CGGCCGGCAC CTTGAGCCCA
CAGGACCTGG TGGACCTCAA GCGATACCTG AAGGCGGACT ACAACCCGGA CAAGGACTTC
CTGCCACCGG ACCTGGCGGC GGCAGCGGCG AAGAACTTCG AACGCAGGCC TTGA
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| Protein sequence | MLRKLSLAIA VSCASNGVAW AADVPMTVKT DLVSVYQEAV DNNADLAAAR ADYGARREVV
PQARAGLLPN LSAGAEMMNT RTKLDEPSIT SNRSGSAWSA TLAQPVFRAD RWFQLQAAEA
VNEQAALELS ATEQNLILQT AQSYFAVLRA QDNLAATKAE ESAFKRQLDQ SNERFDVGLS
DKTDVLQSQA SYDTARANRI IAERQVQDAF EALVTLTNRE YTSIQGVVHT LPIQVPTPND
AKAWVETAGR QNLNLLATNY AVDAAEETLR QRKAGHAPTL DAVAKYQKGD NDSLGFTNPS
QLGVRYSGDV EQTSIGLQLN IPIYSGGLTS SQVREAYQRL SQSEQQRESL RRQVVENTRN
LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YTSVRDYNNS
RYDYILDNLS LKQAAGTLSP QDLVDLKRYL KADYNPDKDF LPPDLAAAAA KNFERRP
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