Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4714 |
Symbol | |
ID | 6113696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 5204683 |
End bp | 5206569 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641624519 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001751560 |
Protein GI | 170723872 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.35194 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAC AAGAAAAAAC GATCAACCTC AGCGAGTCGG CGCAAGTCGA TCAGCAGTCC GTGCAACCCT TCCCGCGTTC GCGCAAGATC TATGTCGAGG GCTCGCGCCC GGACATCCGC GTGCCGATGC GCGAAATCAG CCTGCACGAC ACCCCCACCG ACTTCGGCGG CGAAGCCAAC GCGCCGGTTC TGGTCTACGA CACTTCCGGC CCCTACACCG ATCCCGACGT CATCATCGAT GTGCGAAAAG GCCTGGCCGA TGTGCGGTCG GCCTGGATCG ACGCCCGTGG CGATACCGAG CGCCTGGGTG GGCTGAGCTC GAACTTCGGC CAGCAGCGCC TGAACGACGC CGAACTGGCC AAGCTGCGCT TCAACCATGT GCGCAACCCG CGCCGCGCCA AGGCTGGCGC CAACGTCTCG CAGATGCACT ACGCCCGCCA AGGCATCATT ACCGCCGAGA TGGAATACGT CGCCATCCGC GAGAACATGA AGCTGCAGGA GGCCCGCGCT GCTGGCTTGC TCAAGCAGCA GCACGCCGGC CACAGCTTCG GCGCCAACAT CCCCAAAGAG ATCACCGCCG AATTCGTGCG CGAGGAGATC GCCCGCGGCC GCGCGATCAT CCCGGCCAAC ATCAACCACA CGGAACTGGA GCCGATGATC ATCGGCCGCA ACTTCCTGGT GAAGATCAAC GGCAACATCG GCAACAGCGC CCTGGGCTCC TCGATCGAGG AGGAAGTGGC CAAGCTGACC TGGGGTATTC GCTGGGGCTC AGACACGGTC ATGGACCTTT CGACCGGCAA GCACATCCAC GAAACTCGTG AGTGGATCAT CCGCAACTCG CCGGTACCTA TCGGTACCGT GCCGATCTAC CAGGCCCTGG AAAAGGTCGG AGGGGTTGCC GAGGACCTGA CCTGGGAGCT GTTCCGCGAC ACGCTGATCG AGCAGGCTGA GCAGGGCGTG GACTACTTCA CCATCCATGC TGGCGTGCTG CTGCGCTACG TGCCGCTGAC CGCCAAGCGG GTCACCGGTA TCGTCAGCCG CGGGGGGTCG ATCATGGCCA AGTGGTGCCT GGCGCATCAC CAGGAGAACT TCCTGTACAC GCATTTCGAT GAGATCTGCG AAATCATGAA GGCCTACGAC GTGAGCTTCT CTCTCGGTGA CGGCCTGCGC CCAGGCTCGA TTGCAGATGC CAACGACGCG GCGCAGTTCG GTGAGCTGGA AACACTTGGC GAACTGACCA AGATCGCCTG GAAGCACGAC GTGCAGTGCA TGATCGAAGG CCCTGGCCAT GTGCCGATGC AACTGATCAA GGAGAACATG GACAAGCAGC TGGAATGCTG CGACGAAGCG CCGTTCTACA CCCTCGGCCC TCTGACCACC GACATTGCGC CTGGTTACGA CCACATCACC TCGGGCATCG GCGCGGCCAT GATCGGCTGG TTCGGCTGCG CCATGCTGTG CTACGTCACC CCCAAGGAGC ACCTGGGCCT GCCGAACAAG GATGACGTCA AGACCGGCAT CATCACTTAC AAGATCGCCG CGCATGCTGC CGACCTTGCC AAAGGCCACC CGGGCGCGCA GATCCGTGAC AATGCCCTGT CCAAGGCGCG TTTCGAGTTC CGCTGGGAGG ACCAGTTCAA CCTGGGCCTG GACCCTGACA CCGCGCGTGC CTTCCACGAC GAAACCCTGC CGAAGGAATC GGCCAAGGTC GCGCACTTCT GCTCGATGTG CGGGCCGAAG TTCTGCTCGA TGAAAATCAC CCAGGAAGTA CGGGAATACG CCGCCAACCT GCGCATCGAT GCGGTGGATG TATCGGTTGA GGAGGGGATG CGCGAGCAGG CCGAACGGTT CCGCCAGGAA GGCAGCCAGC TGTACCACAA GGTGTAA
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Protein sequence | MSKQEKTINL SESAQVDQQS VQPFPRSRKI YVEGSRPDIR VPMREISLHD TPTDFGGEAN APVLVYDTSG PYTDPDVIID VRKGLADVRS AWIDARGDTE RLGGLSSNFG QQRLNDAELA KLRFNHVRNP RRAKAGANVS QMHYARQGII TAEMEYVAIR ENMKLQEARA AGLLKQQHAG HSFGANIPKE ITAEFVREEI ARGRAIIPAN INHTELEPMI IGRNFLVKIN GNIGNSALGS SIEEEVAKLT WGIRWGSDTV MDLSTGKHIH ETREWIIRNS PVPIGTVPIY QALEKVGGVA EDLTWELFRD TLIEQAEQGV DYFTIHAGVL LRYVPLTAKR VTGIVSRGGS IMAKWCLAHH QENFLYTHFD EICEIMKAYD VSFSLGDGLR PGSIADANDA AQFGELETLG ELTKIAWKHD VQCMIEGPGH VPMQLIKENM DKQLECCDEA PFYTLGPLTT DIAPGYDHIT SGIGAAMIGW FGCAMLCYVT PKEHLGLPNK DDVKTGIITY KIAAHAADLA KGHPGAQIRD NALSKARFEF RWEDQFNLGL DPDTARAFHD ETLPKESAKV AHFCSMCGPK FCSMKITQEV REYAANLRID AVDVSVEEGM REQAERFRQE GSQLYHKV
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