Gene PputW619_4714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4714 
Symbol 
ID6113696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp5204683 
End bp5206569 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content62% 
IMG OID641624519 
Productthiamine biosynthesis protein ThiC 
Protein accessionYP_001751560 
Protein GI170723872 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0422] Thiamine biosynthesis protein ThiC 
TIGRFAM ID[TIGR00190] thiamine biosynthesis protein ThiC 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.35194 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAC AAGAAAAAAC GATCAACCTC AGCGAGTCGG CGCAAGTCGA TCAGCAGTCC 
GTGCAACCCT TCCCGCGTTC GCGCAAGATC TATGTCGAGG GCTCGCGCCC GGACATCCGC
GTGCCGATGC GCGAAATCAG CCTGCACGAC ACCCCCACCG ACTTCGGCGG CGAAGCCAAC
GCGCCGGTTC TGGTCTACGA CACTTCCGGC CCCTACACCG ATCCCGACGT CATCATCGAT
GTGCGAAAAG GCCTGGCCGA TGTGCGGTCG GCCTGGATCG ACGCCCGTGG CGATACCGAG
CGCCTGGGTG GGCTGAGCTC GAACTTCGGC CAGCAGCGCC TGAACGACGC CGAACTGGCC
AAGCTGCGCT TCAACCATGT GCGCAACCCG CGCCGCGCCA AGGCTGGCGC CAACGTCTCG
CAGATGCACT ACGCCCGCCA AGGCATCATT ACCGCCGAGA TGGAATACGT CGCCATCCGC
GAGAACATGA AGCTGCAGGA GGCCCGCGCT GCTGGCTTGC TCAAGCAGCA GCACGCCGGC
CACAGCTTCG GCGCCAACAT CCCCAAAGAG ATCACCGCCG AATTCGTGCG CGAGGAGATC
GCCCGCGGCC GCGCGATCAT CCCGGCCAAC ATCAACCACA CGGAACTGGA GCCGATGATC
ATCGGCCGCA ACTTCCTGGT GAAGATCAAC GGCAACATCG GCAACAGCGC CCTGGGCTCC
TCGATCGAGG AGGAAGTGGC CAAGCTGACC TGGGGTATTC GCTGGGGCTC AGACACGGTC
ATGGACCTTT CGACCGGCAA GCACATCCAC GAAACTCGTG AGTGGATCAT CCGCAACTCG
CCGGTACCTA TCGGTACCGT GCCGATCTAC CAGGCCCTGG AAAAGGTCGG AGGGGTTGCC
GAGGACCTGA CCTGGGAGCT GTTCCGCGAC ACGCTGATCG AGCAGGCTGA GCAGGGCGTG
GACTACTTCA CCATCCATGC TGGCGTGCTG CTGCGCTACG TGCCGCTGAC CGCCAAGCGG
GTCACCGGTA TCGTCAGCCG CGGGGGGTCG ATCATGGCCA AGTGGTGCCT GGCGCATCAC
CAGGAGAACT TCCTGTACAC GCATTTCGAT GAGATCTGCG AAATCATGAA GGCCTACGAC
GTGAGCTTCT CTCTCGGTGA CGGCCTGCGC CCAGGCTCGA TTGCAGATGC CAACGACGCG
GCGCAGTTCG GTGAGCTGGA AACACTTGGC GAACTGACCA AGATCGCCTG GAAGCACGAC
GTGCAGTGCA TGATCGAAGG CCCTGGCCAT GTGCCGATGC AACTGATCAA GGAGAACATG
GACAAGCAGC TGGAATGCTG CGACGAAGCG CCGTTCTACA CCCTCGGCCC TCTGACCACC
GACATTGCGC CTGGTTACGA CCACATCACC TCGGGCATCG GCGCGGCCAT GATCGGCTGG
TTCGGCTGCG CCATGCTGTG CTACGTCACC CCCAAGGAGC ACCTGGGCCT GCCGAACAAG
GATGACGTCA AGACCGGCAT CATCACTTAC AAGATCGCCG CGCATGCTGC CGACCTTGCC
AAAGGCCACC CGGGCGCGCA GATCCGTGAC AATGCCCTGT CCAAGGCGCG TTTCGAGTTC
CGCTGGGAGG ACCAGTTCAA CCTGGGCCTG GACCCTGACA CCGCGCGTGC CTTCCACGAC
GAAACCCTGC CGAAGGAATC GGCCAAGGTC GCGCACTTCT GCTCGATGTG CGGGCCGAAG
TTCTGCTCGA TGAAAATCAC CCAGGAAGTA CGGGAATACG CCGCCAACCT GCGCATCGAT
GCGGTGGATG TATCGGTTGA GGAGGGGATG CGCGAGCAGG CCGAACGGTT CCGCCAGGAA
GGCAGCCAGC TGTACCACAA GGTGTAA
 
Protein sequence
MSKQEKTINL SESAQVDQQS VQPFPRSRKI YVEGSRPDIR VPMREISLHD TPTDFGGEAN 
APVLVYDTSG PYTDPDVIID VRKGLADVRS AWIDARGDTE RLGGLSSNFG QQRLNDAELA
KLRFNHVRNP RRAKAGANVS QMHYARQGII TAEMEYVAIR ENMKLQEARA AGLLKQQHAG
HSFGANIPKE ITAEFVREEI ARGRAIIPAN INHTELEPMI IGRNFLVKIN GNIGNSALGS
SIEEEVAKLT WGIRWGSDTV MDLSTGKHIH ETREWIIRNS PVPIGTVPIY QALEKVGGVA
EDLTWELFRD TLIEQAEQGV DYFTIHAGVL LRYVPLTAKR VTGIVSRGGS IMAKWCLAHH
QENFLYTHFD EICEIMKAYD VSFSLGDGLR PGSIADANDA AQFGELETLG ELTKIAWKHD
VQCMIEGPGH VPMQLIKENM DKQLECCDEA PFYTLGPLTT DIAPGYDHIT SGIGAAMIGW
FGCAMLCYVT PKEHLGLPNK DDVKTGIITY KIAAHAADLA KGHPGAQIRD NALSKARFEF
RWEDQFNLGL DPDTARAFHD ETLPKESAKV AHFCSMCGPK FCSMKITQEV REYAANLRID
AVDVSVEEGM REQAERFRQE GSQLYHKV