| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4704 |
|---|
| Symbol | |
|---|
| ID | 6113686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 5194009 |
|---|
| End bp | 5196267 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641624509 |
|---|
| Product | DNA topoisomerase IV subunit A |
|---|
| Protein accession | YP_001751550 |
|---|
| Protein GI | 170723862 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0459341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.669252 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACT CACTGGAACT CAGCCTCGAC GGCGTTGAAC GCCGTTCGCT GGCTGACTTC
ACCGAACAGG CCTACCTCAA CTATTCCATG TACGTGATCA TGGACCGGGC CTTGCCGCAC
ATCGGCGACG GCCTCAAGCC TGTGCAACGA CGCATCGTCT ATGCCATGAG CGAGTTGGGG
CTCGACGCCG ATGCCAAGCA CAAGAAGTCG GCGCGTACCG TCGGCGACGT GCTCGGTAAA
TTCCACCCCC ACGGCGATTC GGCCTGCTAC GAAGCCATGG TGCTGATGGC GCAGCCGTTC
AGCTACCGCT ACACGCTGGT CGATGGCCAG GGTAACTGGG GTGCGCCGGA CGATCCGAAG
TCGTTCGCGG CGATGCGTTA CACCGAAGCG CGCCTGTCGC GCTACTCCGA GGTGCTGCTC
AGTGAGCTGG GCCAGGGTAC CGTGGACTGG GTGCCCAACT TCGACGGTAC CCTGCAGGAG
CCTGCAGTAT TGCCGGCACG GCTGCCGAAC ATCCTGCTAA ACGGCACCAC CGGTATTGCC
GTCGGCATGG CCACCGACGT GCCGCCACAT AACCTGCGCG AAGTGGCCAG TGCCTGTGTG
CGCCTGCTCG ACGAGCCCAA GGCCACCCTT GAGCAACTGT GTGAACACAT CCAGGGGCCC
GACTACCCGA CCGAAGCCGA AATCATCACG CCGCGTGCCG AGATCCTCAA GATCTACGAA
AGCGGCCGCG GTTCGATCCG TATGCGCGCC GTATACCGGG TCGAGGACGG CGACATTGTC
GTCACTGCGT TGCCACACCA GGTCTCCGGG GCCAAGGTGC TCGAGCAGAT CGCCGCGCAG
ATGCAGGCGA AGAAGCTGCC GATGGTCGCT GACCTTCGTG ACGAGTCGGA CCATGAAAAC
CCCTGCCGTA TCGTGATCAT CCCGCGCTCT AACCGCGTAG ATGCCGATGA ACTGATGCAG
CACCTGTTCG CCACTACCGA GCTGGAAAGC AGCTACCGGG TCAACGTCAA CATCATCGGC
CTGGATGGCC GGCCGCAGCT CAAGAACCTG CGAGCTTTGC TCCTGGAGTG GCTGCAGTAC
CGTATCGGTA CCGTTCGTCG CCGCCTGCAG CATCGCCTGG AGAAGGTCGA GAGGCGCCTG
CACCTGTTGG AAGGCTTGCT CACTGCATTC CTCAACCTCG ATGAAGTCAT ACACATCATC
CGTACCGAGG AGCATCCCAA GCAGGCATTG ATAGCTCGTT TCGACCTCAC CGAAATCCAG
GCCGACTACA TCCTCGAGAC GCGCTTGCGC CAGCTGGCCC GTCTGGAGGA GATGAAAATC
CGCGGTGAGC AGGACGAATT GCTCAAGGAG CAGGCCAAGC TGCTGGCCCT GCTCGGCAGC
GATGCCAAGC TACGCAAGCT GGTGCGCAGC GAACTGATCA AGGATGCGGA GACTTACGGC
GACGACCGCC GGTCGCCGAT CGTCGCACGC GCCGAAGCCA AGGCGCTTTC GGAAAACGAG
TTGATGCCGA CTGAGCCTGT CACCGTAGTG CTGTCGGAAA AAGGCTGGGT GCGTTGCGCC
AAAGGCCACG ATATCGATGC AACCGGCCTG TCGTACAAGG CGGGGGATGG CTTCAAGGCT
GCAGCAGCGG GGCGTTCCAA CCAGTTTGCC GTGCTCATCG ACTCCACCGG GCGCAGCTAC
TCGGTGGCTG CGCATACCTT GCCATCAGCG CGTGGTCAGG GCGAGCCGCT GACCGGTCGC
CTGACGCCGC CGCCGGGCGC TACTTTCGAG TGCGTGCTGT TGCCGGACGA TGATGCGCTG
TACGTGGTGG CATCGGATGC CGGTTACGGC TTTGTAGTCA AAGGTGAGGA TTTGCAGGCC
AAGAACAAGG CCGGCAAGGG GCTGCTGAGT TTGCCTAACG GCGCCAAGGT CATTAGCCCG
CGCCCGGTGG CCAACCGTGA GCAGGACTGG CTGGCGGCAG TGACCACCGA AGGTCGCTTG
CTGGTGTTCA AGGTCGCTGA CCTGCCACAG CTGGGCAAAG GCAAGGGCAA CAAGATCATC
GGTGTGCCCG GTGATCGTGT CGCCAGCCGT GAAGAATATG TTACAGATCT TGCGGTAATC
CCCGAGGGCG CGACCCTTGT ATTGCAAGCT GGCAAGCGTA CCCTGTCTTT GAAGCCGGAT
GACCTTGAGC ATTACAAGGG CGAGCGCGGA CGGCGGGGTA GCAAGCTGCC ACGTGGGTTC
CAGCGCGTTG ACGGTTTGCA GGTGGAAGGT CCGGCGTAA
|
|---|
| Protein sequence | MSDSLELSLD GVERRSLADF TEQAYLNYSM YVIMDRALPH IGDGLKPVQR RIVYAMSELG
LDADAKHKKS ARTVGDVLGK FHPHGDSACY EAMVLMAQPF SYRYTLVDGQ GNWGAPDDPK
SFAAMRYTEA RLSRYSEVLL SELGQGTVDW VPNFDGTLQE PAVLPARLPN ILLNGTTGIA
VGMATDVPPH NLREVASACV RLLDEPKATL EQLCEHIQGP DYPTEAEIIT PRAEILKIYE
SGRGSIRMRA VYRVEDGDIV VTALPHQVSG AKVLEQIAAQ MQAKKLPMVA DLRDESDHEN
PCRIVIIPRS NRVDADELMQ HLFATTELES SYRVNVNIIG LDGRPQLKNL RALLLEWLQY
RIGTVRRRLQ HRLEKVERRL HLLEGLLTAF LNLDEVIHII RTEEHPKQAL IARFDLTEIQ
ADYILETRLR QLARLEEMKI RGEQDELLKE QAKLLALLGS DAKLRKLVRS ELIKDAETYG
DDRRSPIVAR AEAKALSENE LMPTEPVTVV LSEKGWVRCA KGHDIDATGL SYKAGDGFKA
AAAGRSNQFA VLIDSTGRSY SVAAHTLPSA RGQGEPLTGR LTPPPGATFE CVLLPDDDAL
YVVASDAGYG FVVKGEDLQA KNKAGKGLLS LPNGAKVISP RPVANREQDW LAAVTTEGRL
LVFKVADLPQ LGKGKGNKII GVPGDRVASR EEYVTDLAVI PEGATLVLQA GKRTLSLKPD
DLEHYKGERG RRGSKLPRGF QRVDGLQVEG PA
|
|---|
| |