| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4700 |
|---|
| Symbol | psd |
|---|
| ID | 6113682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 5189301 |
|---|
| End bp | 5190164 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641624505 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001751546 |
|---|
| Protein GI | 170723858 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.551192 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.933822 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCC GTCTGTTCAT CATCAGCCAG TACCTGCTGC CGCACCATCT GCTGTCGCGG
CTCGCCGGCT GCGTCGCCGA GTGCCGCGCA CGCTGGTTCA AGAATGCCTT CACCGCCTGG
TTCGCCAAGC GCTACCAGGT GAACATGAAC GAGGCACTGG TCGAAGACCT CACCGCCTAC
GAACACTTCA ATGCATTCTT CACCCGTGCC CTCAAGCCAG ATGCACGCCC GCTCGACGAA
ACCCCGGGGG CAATCCTCTG TCCGGCTGAT GGCGCTGTAA GCCAGCTGGG GCCGATCGAG
CACGGCCGCA TCTTCCAGGC AAAGGGCCAC AGTTTCAGCG CTCTGGAGCT GCTCGGCGGC
GACCCGGCGC TGGCCGCCCC GTTCATGGGC GGTGAGTTCG CTACCATCTA CCTGTCGCCA
AAGGACTACC ATCGCGTGCA CATGCCGCTG GCCGGTACCT TGCGCGAAAT GGTCTATGTG
CCGGGTCGCC TGTTCTCGGT CAACCAGACC ACCGCAGAAA ACGTCCCCGA GCTGTTTGCC
CGCAACGAGC GTGTAGTGTG TCTGTTCGAC ACCGAGCGCG GGCCAATGGC CGTCGTGCTG
GTGGGGGCGA TGATCGTTGC CTCGATCGAG ACCGTATGGG CCGGCCTGGT TACCCCGCCC
AAACGCGAAC TCAAGACCTT CCGCTATGAC GAAGGCAGCC GTGCGCCGAT CCATCTGGAG
AAGGGTGCGG AACTGGGCCG CTTCAAGCTG GGCTCCACAG CTATCGTGCT GTTTGGGCCG
GAGCAGGTGA AGTGGGCTGA AACCCTGGGT GCCGGTTCGG CAACGCGCAT GGGTGAGCTG
TTGGCAGTTC CCGTGCAGGC TTGA
|
|---|
| Protein sequence | MKSRLFIISQ YLLPHHLLSR LAGCVAECRA RWFKNAFTAW FAKRYQVNMN EALVEDLTAY
EHFNAFFTRA LKPDARPLDE TPGAILCPAD GAVSQLGPIE HGRIFQAKGH SFSALELLGG
DPALAAPFMG GEFATIYLSP KDYHRVHMPL AGTLREMVYV PGRLFSVNQT TAENVPELFA
RNERVVCLFD TERGPMAVVL VGAMIVASIE TVWAGLVTPP KRELKTFRYD EGSRAPIHLE
KGAELGRFKL GSTAIVLFGP EQVKWAETLG AGSATRMGEL LAVPVQA
|
|---|
| |