Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4598 |
Symbol | |
ID | 6113579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 5078664 |
End bp | 5080577 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641624404 |
Product | arginine decarboxylase |
Protein accession | YP_001751447 |
Protein GI | 170723759 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0659709 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGTAC GACGCACACG CAAAGACGAT GGTAGCCAAT GGACCGTGGC CGACAGCCGC AGTGTTTATG GTATCCGCCA TTGGGGCGCT GGTTATTTCG CCATCAATGA GGCCGGGCGC GTCGAAGTAC GCCCCAACGG CCCTCAGAGC GCGCCGATCG ACTTGTTCGA GCAGGTCGAT GAGCTGCGCC AGAGCGGCCT GTCGCTGCCG CTGCTGGTCC GCTTCCCCGA CATTCTGCAG GACCGCGTGC GCCAGTTGAC CGGTGCCTTC GATGCCAATA TCGCGCGCCT TGAGTACCAG AGCCAGTACA CCGCGCTGTA CCCGATCAAG GTCAACCAAC AGGAAGCGGT GGTAGAGAAC ATCATCGCCA CGCAGAACGT TTCCATCGGC CTGGAAGCAG GCTCCAAGCC TGAGCTGCTG GCGGTGCTGG CGCTGGCCCC TAAGGGCGGC ACCATCGTCT GCAACGGCTA CAAGGACCGC GAGTTCATTC GCCTGGCGCT GATGGGCCAG AAGCTCGGCC ACAATGTGTT CATCGTCATC GAGAAAGAGT CCGAAGTGGC GCTGGTTATC GAAGAGGCCG CCGAACTCAA GGTCAAGCCG CAGGTGGGGC TGCGCGTTCG CCTGTCATCG CTGGCTTCGA GCAAATGGGC AGACACCGGT GGTGAGAAGT CCAAGTTCGG CCTTTCTGCT GCCCAGCTGA TTTCGGTTGT GCAGCGCTTC CGCGATGCCG GGCTGGACCA GGGCATCCGC CTGCTGCACT TCCACATGGG TTCACAGATC GCCAACCTGG CCGACTACCA GCACGGTTTC AAGGAAGCGA TCCGCTACTA CGGCGAGCTG CGTGCCCTGG GCCTGCCGGT CGACCATATC GACGTGGGCG GTGGCCTGGG TGTGGACTAC GACGGTACCC ACTCGCGCAA CGCCAGTTCG ATCAACTACG ACATGGACGA CTATGCCGGC GTGGTGGTGG GCATGCTCAA GGAGTTCTGC GACGCGCAGG GCTTGCCGCA TCCGCACATT TTCTCCGAGA GTGGCCGTTC GCTGACTGCG CACCACGCCA TGCTGGTGAT ACAGGTGACC GACGTCGAGA AACACAACGA CGACGTGCCG ACCATCGAGA ACAAGGAAAG CCTGCCCGAG ACCGTGCAGT GGCTGGCCGA CCTGCTCGGC CCGACCGATA TCGAGATGGT CACCGAGACC TACTGGCGCG CCACGCACTA CATGGGTGAC GTGGCAGCGC AATATGCCGA TGGCAAGATC AGCCTGGCCG AAAAGGCCCT GGCCGAGCAG TGCTACTTCG CCGTGTGCCG TCGTCTGCAC AACTCGCTCA AGGCCCGCCA GCGCTCGCAC CGCCAGGTGC TGGACGAACT GAACGACAAG CTGGCCGACA AGTACATCTG CAACTTCTCG GTGTTCCAGA GCCTGCCGGA CACCTGGGCC ATCGGCCAGG TGCTGCCGAT CATCCCGTTG CACCGCCTGG ACGAAGAGCC GCTGCGCCGT GCAGTGCTGC AGGACCTGAC CTGCGACTCC GACGGCAAGA TCAACCAGTA CGTCGACGAG CAGAGCATCG AGACCAGCAT GCCGGTGCAC TCGCTCAAGG ACGGTGAGGA CTACCTGCTA GGCGTGTTCC TGGTCGGTGC CTACCAGGAA ATCCTCGGTG ACATGCACAA CCTGTTCGGT GATACCGACT CGGTGAACAT TTACCAGAAC GCCGATGGCA GCGTGTTCCA CGCCGGTATC GAGACCCACG ACACCATCGA AGACATGTTG CGCTATGTGC ACCTGTCGCC GGAGGAGTTG ATGACCCACT ACCGCGACAA GGTGGCCAGC GCCAAGATCA GCGCCCGCGA GCGTACCCAG TTCCTCGATG CATTGCGCCT GGGGCTGACC CGGTCTTCCT ACCTGTCGTC GTGA
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Protein sequence | MSVRRTRKDD GSQWTVADSR SVYGIRHWGA GYFAINEAGR VEVRPNGPQS APIDLFEQVD ELRQSGLSLP LLVRFPDILQ DRVRQLTGAF DANIARLEYQ SQYTALYPIK VNQQEAVVEN IIATQNVSIG LEAGSKPELL AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI EKESEVALVI EEAAELKVKP QVGLRVRLSS LASSKWADTG GEKSKFGLSA AQLISVVQRF RDAGLDQGIR LLHFHMGSQI ANLADYQHGF KEAIRYYGEL RALGLPVDHI DVGGGLGVDY DGTHSRNASS INYDMDDYAG VVVGMLKEFC DAQGLPHPHI FSESGRSLTA HHAMLVIQVT DVEKHNDDVP TIENKESLPE TVQWLADLLG PTDIEMVTET YWRATHYMGD VAAQYADGKI SLAEKALAEQ CYFAVCRRLH NSLKARQRSH RQVLDELNDK LADKYICNFS VFQSLPDTWA IGQVLPIIPL HRLDEEPLRR AVLQDLTCDS DGKINQYVDE QSIETSMPVH SLKDGEDYLL GVFLVGAYQE ILGDMHNLFG DTDSVNIYQN ADGSVFHAGI ETHDTIEDML RYVHLSPEEL MTHYRDKVAS AKISARERTQ FLDALRLGLT RSSYLSS
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