Gene PputW619_4512 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4512 
Symbol 
ID6113484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp4978604 
End bp4982434 
Gene Length3831 bp 
Protein Length1276 aa 
Translation table11 
GC content65% 
IMG OID641624309 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001751361 
Protein GI170723673 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.292373 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCAATC TCAATCATCC GTCCTCGCCG CGCACCGTCA CGCCGGCCCC AGCCGCTTCG 
GTGCGCGGCT CGGTCAAAGG TGCATTGGCC CTGCTGGCCT TGCTGCTGCT GGGTTTGCTG
CTTTGGCAAC TGTTCTCGCA GTTCCGCCAC ACCCAGGCCG AGCAGCGCCA GCAGCACCTG
GACGCAAGCG TCGAACTGGC AGACCATCTG GCCCTGAACA TGGCGCTCAA GGCCCAGCAG
GCGCTGAATG TAGTGCAGCC GTATGTCAAA GCGCCGACGC CTGCCGCCCT GCCCAGCCTG
CTCGACACGC TACGCGAGCG CCTGCCAAAC CTGCGCGACC TGGCCTGGCT GGACCACAGC
GGGCGGCTAC AGAGCGACAG CCTGGCCGGC AGCCCCGACC GTGCGCTGAT TGACGAGCTG
TTCAGGCTGA ACCAGGGCCG GCCTTATTTC TTCGCCAACG CGGCGGACAA CCGCACCGTC
TACCTGCTGT TGCGCCAGGC CACCGAGCAG GGTCGCGGCT ACTGGCTGCT GCGCCTGTCC
AACGATTTTT ACCGCACCCT GACCCAGCAC CTGGATGGCC CCGGACACCC CCTGTGGCTG
CTGGAGAACA GCCGCAGCGG CGAGGTGCTG GAACGCCACG CTCCAGCGCA GACCAGCGAC
CAGCCGTTGC AAAGCGTGAT GCTGGTCTTC ATCGACAACA GTGTCTGGCA GCTGCGTGGT
CTGTTCGATG CGGGCCTTGC CCAGCAGAAA CTGTTGCCGG CACTGCTGGG CAAGTGCCTG
CTGGCGCTGT TCTGTGCCCT GCTGCCGGTG CTGGCGCTGA TCAACATGCG CCGCCGCCAG
CGCGCCCTGC AGGAGGACCG TCGGCGCTAC CAGGAAATCT TCGAGGGCAC CGGCGTAGCA
CTGTGCGTGC TCGACCTCTC CAGCCTGCCC GGCCAGCTTG ACCGATACCA CCTGCGCAAC
CTCGCCGCGC TCAAGCAGAG CCTGGCGCTC GACTCCAGCC TGCGCCGCTC GCTGCTGCTG
GAGCTGAAGA TCACCGAAAT CAACCAAGTG GCGCGCCAGC TGCTCAACGT CGACTGCCAC
GCAGGCGCCT GGCAACGGTT GATCGACGGC AGCGGCGACG GCCGTGACAG CGTCGGCATG
CAACTGATCG ATGCGCTGAT CGAGCAGCGC CCGCTGCTGG AACTGGAAGT GCGCCTGCCC
GCCCCCTTGG GGGGTGAGCT GCACCTATGG CTGATGGCGC GGCTGCCGGA ACAACGCCGC
GACTACCAGG CGGTGATCCT GAGCATCAGC GACATCACCA GCCGCAAGCA GGTGGAGCTA
TCGCTGCTGG AGCGCGAAAG CTTCTGGTCG GACGTGGTGC GTACCGTGCC CGACCAGTTG
TACGTGCAGG ACGTGCTCAG CCAGCGGATG ATCTTCAGCA ACCGCCACCT CGGCGAGACC
TTGGGCTACG ACCGCACCGA GCTTGCGCAG ATGGGCGAGC GCTTCTGGGA GCTGCTGCTG
CACCCCGAGG ATGCGGCGCA CTACCAGGCC CTGCGCCAGC AGCAACGCGC CAACGGCCAC
GGCCAGTCCC TGCATTGCCA GCTGCGCTTC CGCCACCGTG ACGGCGGCTG GCGCTGCTAC
GACATCCGTG AACAAGTGCT GACCCGCGAC AGCGATGGCC AGGTTACCCG CATCATCGGT
GTGGGCAAGG ACGTCACTGT GCAGATCGAG GCCAGCCAGT CGCTACGCGA CAGCGAGCAG
CGCTACCGCA TGCTCGCCGA AAGCATCAGC GATGTGATCT TCTCCACCGA CAGCAAGCTG
CAGCTCAACT ACGTCAGCCC CTCGGTGCAG GCAGTGCTGG GCTACAACAC CGACTGGATC
TTTGAGAACG GCTGGCAGTC GATCGTCGCC AACCCGTCCC AGCTCACCGG CATTTACAGC
CTGATGGAAC GGGTCAGCAA GGCCATGGGC GACCGGGAAC AGCTGGCACA ACTGCGCCAG
CACCTGCCCA ACCAGCTGTT TTTGTTCGAC TGCCTGCGCG CCGATGGCCG CAAGATCCCT
ATCGAGCTGC GCCTGGTGCT GGTGTGGGAC GACCGCGAGC GCTTCGAGGG TGTGCTGGGC
GTGGGCCGCG ACATCAGCCA GCAACGCCGT GCGGAAAAAG ACCTGCGCAT GGCCGCCACG
GTCTTCGAAC ACTCAACCTC GGCCATCCTC ATCACCGACC CGGCCGGGTA TATCGTGCAG
GCCAACGAAG CGTTCAGCCG GGTCAGCGGA TATTCGGTCA GCGATGTGCT CGACCAGCTG
CCAAGCATGC TGACTGTAGA CGACCAGCAG GAGGGCCACC TACGCTACGT ACTCAAACAG
CTGCACCTGC GCGGCAGCTG GGAAGGCGAA GTGTGGCTCA AGCGCCGCAG TGGCGAGCAC
TACCCGGCCT GGGTCGGTAT CACCGCGGTG CTCGATGACG AGGGCGACCT GGCCAGCTAC
GTGTGTTTCT TCACGGACAT CAGCGAACGC AAGGCCAGCG AACAGCGCAT TCATCGCCTG
GCCTATTACG ATGCCCTGAC CCACCTGCCC AACCGCACGC TGTTCCAGGA CCGCCTGCAC
ACCGCCCTGC AACAAGCTGA GCGGCAGAAG TCGTGGGTGG TACTGATGTT CCTCGACCTG
GACCGTTTCA AGCCGATCAA CGACTCCCTG GGCCACGCTG CGGGCGATCG CATGCTCAAG
GACATGGCCC TGCGCCTGCT GGCCTGTGTC GACGATGACG ACACCGTGGC GCGCATGGGC
GGTGACGAGT TCACCCTGCT GCTGCAATCG CGCGCTACCC GCGAAATGGC GCTCAACCGC
GCCATCCATG TGGCCGAGAA CATCCTCGCC AGCCTGGTGC GGCCATTCGT GCTCGAAGGC
CGCGAGTTCT TCGTCACCGC CAGTATCGGC ATCGCCCTCA GCCCGCAGGA CGGCGGCGAA
CTGAGCCAAC TGATGAAGAA CGCCGACACC GCCATGTACC ACGCCAAGGA GCGAGGCAAG
AACAACTTCC AGTTCTACCA GGCCGAGATG AATGCCAGCG CCCTGGAGCG CCTGGAGCTG
GAAAGCGACC TGCGCCATGC CCTGGAGCAG AACGAATTCA TCCTCTACTA CCAGCCGCAG
TTCAGCGGCG ACGGCAAGCG CCTGACCGGT GCCGAGGCGC TGCTGCGCTG GCGCCACCCC
ACGCGCGGCC TGGTGCCGCC GGGCGACTTC ATCCCGGTGA TCGAGGAGCT GGGGCTGGTG
GTGGATGTCG GCGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG
GCCAAGGTGC GTGTGCCGAA GGTGTCAGTG AACATCTCGG CCCGGCAGTT CTCCGACGGC
CAGCTGGGCA AGCGCATCGC CACCGTCCTC GAAGAAACCG GCCTGCCGCC TGCGTGCCTG
GAACTGGAGC TGACCGAAAG CATCCTGATG CGCGATGTGA ACGAAGCGAT GCAGATACTC
GACAGCCTGA AGGTGCTGGG CCTGAGCATT GCGGTGGACG ACTTCGGCAC CGGCTACTCG
TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTGCTGA AGATCGACCG CACCTTCGTC
GACGGGCTGC CCGAGGGCGA GCAGGACGCG CAGATCGCCC GGGCGATCAT CGCCATGGCG
CACAGCCTGA ACCTGGCGGT GATCGCCGAG GGCGTCGAAA CCCACGAGCA GCTGGAGTTC
CTGCGTGAGC ATGGCTGTGA CGAGGTGCAA GGCTACCTGT TCGGGCGGCC GATGCCGGCC
AGCCAGTTCG AGGCGCAGTT CAGCAACGAG ACGCTGTTCA TGTTCCAGTG A
 
Protein sequence
MTNLNHPSSP RTVTPAPAAS VRGSVKGALA LLALLLLGLL LWQLFSQFRH TQAEQRQQHL 
DASVELADHL ALNMALKAQQ ALNVVQPYVK APTPAALPSL LDTLRERLPN LRDLAWLDHS
GRLQSDSLAG SPDRALIDEL FRLNQGRPYF FANAADNRTV YLLLRQATEQ GRGYWLLRLS
NDFYRTLTQH LDGPGHPLWL LENSRSGEVL ERHAPAQTSD QPLQSVMLVF IDNSVWQLRG
LFDAGLAQQK LLPALLGKCL LALFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA
LCVLDLSSLP GQLDRYHLRN LAALKQSLAL DSSLRRSLLL ELKITEINQV ARQLLNVDCH
AGAWQRLIDG SGDGRDSVGM QLIDALIEQR PLLELEVRLP APLGGELHLW LMARLPEQRR
DYQAVILSIS DITSRKQVEL SLLERESFWS DVVRTVPDQL YVQDVLSQRM IFSNRHLGET
LGYDRTELAQ MGERFWELLL HPEDAAHYQA LRQQQRANGH GQSLHCQLRF RHRDGGWRCY
DIREQVLTRD SDGQVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDSKL
QLNYVSPSVQ AVLGYNTDWI FENGWQSIVA NPSQLTGIYS LMERVSKAMG DREQLAQLRQ
HLPNQLFLFD CLRADGRKIP IELRLVLVWD DRERFEGVLG VGRDISQQRR AEKDLRMAAT
VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YSVSDVLDQL PSMLTVDDQQ EGHLRYVLKQ
LHLRGSWEGE VWLKRRSGEH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL
AYYDALTHLP NRTLFQDRLH TALQQAERQK SWVVLMFLDL DRFKPINDSL GHAAGDRMLK
DMALRLLACV DDDDTVARMG GDEFTLLLQS RATREMALNR AIHVAENILA SLVRPFVLEG
REFFVTASIG IALSPQDGGE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL
ESDLRHALEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV
VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGKRIATVL EETGLPPACL
ELELTESILM RDVNEAMQIL DSLKVLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV
DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA
SQFEAQFSNE TLFMFQ