Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4512 |
Symbol | |
ID | 6113484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 4978604 |
End bp | 4982434 |
Gene Length | 3831 bp |
Protein Length | 1276 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641624309 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001751361 |
Protein GI | 170723673 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.292373 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCAATC TCAATCATCC GTCCTCGCCG CGCACCGTCA CGCCGGCCCC AGCCGCTTCG GTGCGCGGCT CGGTCAAAGG TGCATTGGCC CTGCTGGCCT TGCTGCTGCT GGGTTTGCTG CTTTGGCAAC TGTTCTCGCA GTTCCGCCAC ACCCAGGCCG AGCAGCGCCA GCAGCACCTG GACGCAAGCG TCGAACTGGC AGACCATCTG GCCCTGAACA TGGCGCTCAA GGCCCAGCAG GCGCTGAATG TAGTGCAGCC GTATGTCAAA GCGCCGACGC CTGCCGCCCT GCCCAGCCTG CTCGACACGC TACGCGAGCG CCTGCCAAAC CTGCGCGACC TGGCCTGGCT GGACCACAGC GGGCGGCTAC AGAGCGACAG CCTGGCCGGC AGCCCCGACC GTGCGCTGAT TGACGAGCTG TTCAGGCTGA ACCAGGGCCG GCCTTATTTC TTCGCCAACG CGGCGGACAA CCGCACCGTC TACCTGCTGT TGCGCCAGGC CACCGAGCAG GGTCGCGGCT ACTGGCTGCT GCGCCTGTCC AACGATTTTT ACCGCACCCT GACCCAGCAC CTGGATGGCC CCGGACACCC CCTGTGGCTG CTGGAGAACA GCCGCAGCGG CGAGGTGCTG GAACGCCACG CTCCAGCGCA GACCAGCGAC CAGCCGTTGC AAAGCGTGAT GCTGGTCTTC ATCGACAACA GTGTCTGGCA GCTGCGTGGT CTGTTCGATG CGGGCCTTGC CCAGCAGAAA CTGTTGCCGG CACTGCTGGG CAAGTGCCTG CTGGCGCTGT TCTGTGCCCT GCTGCCGGTG CTGGCGCTGA TCAACATGCG CCGCCGCCAG CGCGCCCTGC AGGAGGACCG TCGGCGCTAC CAGGAAATCT TCGAGGGCAC CGGCGTAGCA CTGTGCGTGC TCGACCTCTC CAGCCTGCCC GGCCAGCTTG ACCGATACCA CCTGCGCAAC CTCGCCGCGC TCAAGCAGAG CCTGGCGCTC GACTCCAGCC TGCGCCGCTC GCTGCTGCTG GAGCTGAAGA TCACCGAAAT CAACCAAGTG GCGCGCCAGC TGCTCAACGT CGACTGCCAC GCAGGCGCCT GGCAACGGTT GATCGACGGC AGCGGCGACG GCCGTGACAG CGTCGGCATG CAACTGATCG ATGCGCTGAT CGAGCAGCGC CCGCTGCTGG AACTGGAAGT GCGCCTGCCC GCCCCCTTGG GGGGTGAGCT GCACCTATGG CTGATGGCGC GGCTGCCGGA ACAACGCCGC GACTACCAGG CGGTGATCCT GAGCATCAGC GACATCACCA GCCGCAAGCA GGTGGAGCTA TCGCTGCTGG AGCGCGAAAG CTTCTGGTCG GACGTGGTGC GTACCGTGCC CGACCAGTTG TACGTGCAGG ACGTGCTCAG CCAGCGGATG ATCTTCAGCA ACCGCCACCT CGGCGAGACC TTGGGCTACG ACCGCACCGA GCTTGCGCAG ATGGGCGAGC GCTTCTGGGA GCTGCTGCTG CACCCCGAGG ATGCGGCGCA CTACCAGGCC CTGCGCCAGC AGCAACGCGC CAACGGCCAC GGCCAGTCCC TGCATTGCCA GCTGCGCTTC CGCCACCGTG ACGGCGGCTG GCGCTGCTAC GACATCCGTG AACAAGTGCT GACCCGCGAC AGCGATGGCC AGGTTACCCG CATCATCGGT GTGGGCAAGG ACGTCACTGT GCAGATCGAG GCCAGCCAGT CGCTACGCGA CAGCGAGCAG CGCTACCGCA TGCTCGCCGA AAGCATCAGC GATGTGATCT TCTCCACCGA CAGCAAGCTG CAGCTCAACT ACGTCAGCCC CTCGGTGCAG GCAGTGCTGG GCTACAACAC CGACTGGATC TTTGAGAACG GCTGGCAGTC GATCGTCGCC AACCCGTCCC AGCTCACCGG CATTTACAGC CTGATGGAAC GGGTCAGCAA GGCCATGGGC GACCGGGAAC AGCTGGCACA ACTGCGCCAG CACCTGCCCA ACCAGCTGTT TTTGTTCGAC TGCCTGCGCG CCGATGGCCG CAAGATCCCT ATCGAGCTGC GCCTGGTGCT GGTGTGGGAC GACCGCGAGC GCTTCGAGGG TGTGCTGGGC GTGGGCCGCG ACATCAGCCA GCAACGCCGT GCGGAAAAAG ACCTGCGCAT GGCCGCCACG GTCTTCGAAC ACTCAACCTC GGCCATCCTC ATCACCGACC CGGCCGGGTA TATCGTGCAG GCCAACGAAG CGTTCAGCCG GGTCAGCGGA TATTCGGTCA GCGATGTGCT CGACCAGCTG CCAAGCATGC TGACTGTAGA CGACCAGCAG GAGGGCCACC TACGCTACGT ACTCAAACAG CTGCACCTGC GCGGCAGCTG GGAAGGCGAA GTGTGGCTCA AGCGCCGCAG TGGCGAGCAC TACCCGGCCT GGGTCGGTAT CACCGCGGTG CTCGATGACG AGGGCGACCT GGCCAGCTAC GTGTGTTTCT TCACGGACAT CAGCGAACGC AAGGCCAGCG AACAGCGCAT TCATCGCCTG GCCTATTACG ATGCCCTGAC CCACCTGCCC AACCGCACGC TGTTCCAGGA CCGCCTGCAC ACCGCCCTGC AACAAGCTGA GCGGCAGAAG TCGTGGGTGG TACTGATGTT CCTCGACCTG GACCGTTTCA AGCCGATCAA CGACTCCCTG GGCCACGCTG CGGGCGATCG CATGCTCAAG GACATGGCCC TGCGCCTGCT GGCCTGTGTC GACGATGACG ACACCGTGGC GCGCATGGGC GGTGACGAGT TCACCCTGCT GCTGCAATCG CGCGCTACCC GCGAAATGGC GCTCAACCGC GCCATCCATG TGGCCGAGAA CATCCTCGCC AGCCTGGTGC GGCCATTCGT GCTCGAAGGC CGCGAGTTCT TCGTCACCGC CAGTATCGGC ATCGCCCTCA GCCCGCAGGA CGGCGGCGAA CTGAGCCAAC TGATGAAGAA CGCCGACACC GCCATGTACC ACGCCAAGGA GCGAGGCAAG AACAACTTCC AGTTCTACCA GGCCGAGATG AATGCCAGCG CCCTGGAGCG CCTGGAGCTG GAAAGCGACC TGCGCCATGC CCTGGAGCAG AACGAATTCA TCCTCTACTA CCAGCCGCAG TTCAGCGGCG ACGGCAAGCG CCTGACCGGT GCCGAGGCGC TGCTGCGCTG GCGCCACCCC ACGCGCGGCC TGGTGCCGCC GGGCGACTTC ATCCCGGTGA TCGAGGAGCT GGGGCTGGTG GTGGATGTCG GCGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG GCCAAGGTGC GTGTGCCGAA GGTGTCAGTG AACATCTCGG CCCGGCAGTT CTCCGACGGC CAGCTGGGCA AGCGCATCGC CACCGTCCTC GAAGAAACCG GCCTGCCGCC TGCGTGCCTG GAACTGGAGC TGACCGAAAG CATCCTGATG CGCGATGTGA ACGAAGCGAT GCAGATACTC GACAGCCTGA AGGTGCTGGG CCTGAGCATT GCGGTGGACG ACTTCGGCAC CGGCTACTCG TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTGCTGA AGATCGACCG CACCTTCGTC GACGGGCTGC CCGAGGGCGA GCAGGACGCG CAGATCGCCC GGGCGATCAT CGCCATGGCG CACAGCCTGA ACCTGGCGGT GATCGCCGAG GGCGTCGAAA CCCACGAGCA GCTGGAGTTC CTGCGTGAGC ATGGCTGTGA CGAGGTGCAA GGCTACCTGT TCGGGCGGCC GATGCCGGCC AGCCAGTTCG AGGCGCAGTT CAGCAACGAG ACGCTGTTCA TGTTCCAGTG A
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Protein sequence | MTNLNHPSSP RTVTPAPAAS VRGSVKGALA LLALLLLGLL LWQLFSQFRH TQAEQRQQHL DASVELADHL ALNMALKAQQ ALNVVQPYVK APTPAALPSL LDTLRERLPN LRDLAWLDHS GRLQSDSLAG SPDRALIDEL FRLNQGRPYF FANAADNRTV YLLLRQATEQ GRGYWLLRLS NDFYRTLTQH LDGPGHPLWL LENSRSGEVL ERHAPAQTSD QPLQSVMLVF IDNSVWQLRG LFDAGLAQQK LLPALLGKCL LALFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA LCVLDLSSLP GQLDRYHLRN LAALKQSLAL DSSLRRSLLL ELKITEINQV ARQLLNVDCH AGAWQRLIDG SGDGRDSVGM QLIDALIEQR PLLELEVRLP APLGGELHLW LMARLPEQRR DYQAVILSIS DITSRKQVEL SLLERESFWS DVVRTVPDQL YVQDVLSQRM IFSNRHLGET LGYDRTELAQ MGERFWELLL HPEDAAHYQA LRQQQRANGH GQSLHCQLRF RHRDGGWRCY DIREQVLTRD SDGQVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDSKL QLNYVSPSVQ AVLGYNTDWI FENGWQSIVA NPSQLTGIYS LMERVSKAMG DREQLAQLRQ HLPNQLFLFD CLRADGRKIP IELRLVLVWD DRERFEGVLG VGRDISQQRR AEKDLRMAAT VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YSVSDVLDQL PSMLTVDDQQ EGHLRYVLKQ LHLRGSWEGE VWLKRRSGEH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL AYYDALTHLP NRTLFQDRLH TALQQAERQK SWVVLMFLDL DRFKPINDSL GHAAGDRMLK DMALRLLACV DDDDTVARMG GDEFTLLLQS RATREMALNR AIHVAENILA SLVRPFVLEG REFFVTASIG IALSPQDGGE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL ESDLRHALEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGKRIATVL EETGLPPACL ELELTESILM RDVNEAMQIL DSLKVLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA SQFEAQFSNE TLFMFQ
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