| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4347 |
|---|
| Symbol | |
|---|
| ID | 6113317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 4790924 |
|---|
| End bp | 4792132 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641624142 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001751196 |
|---|
| Protein GI | 170723508 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0000357829 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCTCA CCGATACCGC CATTCGCACC GCAAGACCCC GCGACAAGCT ATACCGAATC
GCTGACGCGC AGGGTCTCTG CCTTGAGGTG ACAACAGCTG GCGGGAAGCT TTGGCGCCTT
CGCTATCGCT TTGAAGGCAA AGCCAAAATG CTTGGCTTGG GCACCTACCC CTCCGTTACC
CTCGCCCACG CCCGCGAACG CCGGGATGCT GCTCGAAAAC TCTTGTCGCA GGGCATCGAC
CCAAGCGCAT ATAAACAGCA GGAAAAAGCA GCCGCTGAGG CCCAGGCCCT GACGCTCGAA
ACGCTGGCTC GGGAGTGGTA CGACTACAAC CAGCCGCGAT GGGCACCGGC CACCGCGTCC
AAGGCCCTGC AATATCTGGA GTCCGACATT TTCCCGCTGA TTGGCAAGCG GCCCGCCGCC
GAAGTCCAGC GCCCTGAACT TGTTGACCTA GTCCGCAAGA TCGAGCAGCG AGAGGCGTTT
AATGTCGCCC GCAAGGTTCG CCAGTGGCTA AGCCAGATAT TCCGCTTCGG TCTGGCCAAG
GGCGTAGTGG CCGGCAATCC CGCCACCGAT CTGGACGTGG TAGCGGCCCA CGCCCCGCGC
ACTCGCCACC ATCCGCACGT ATCGGAAGCC GAATTACCGG AGCTACTGGA GAAACTTGAG
GCAGCCCAAT GCGACTTCAC CAGCAAGATC GCCATTCGCC TGCTGCTGCT GACGGCAGTG
CGACCTGGGG AGCTGCGGCT GGCACCATGG GATGAGTTCG ACCTGGAGTC AGCGACCTGG
ACGATCCCTG CAGCCCGGAT GAAAGCGCGG CGCCCACACA TAGTCCCGCT CCCGCGTCAG
GCCGTGAACC TGCTGCGTGC CCTGCATGAG CTAACCGGCA CCTACCCCCT CGCCTTCCCT
GGGCGTAATG ATCGATCCAG ACCAATGAGC GAGAACACAG TGAACAAGGC GTTGTCCACG
ATGGGCTATG AGGGTCGCCA GACTGGCCAC GGCTTCCGTC ATCTGCTGAG CACCAGTCTA
AATACTCGAG GCTACAACCG CGACTGGATC GAACGGCAAC TGGCCCACGG CGATCAAGAC
TCGATTCGCG ACACGTACAA CCATGCACAT TACCTGGAGC AGCGACGGGA AATGATGCAG
ACCTGGGCAG ACCATGTTGA CGCCCTAGCC GAACAAACCA GTGTCGTAAA ATTCAAAGCA
AGAGCCTAA
|
|---|
| Protein sequence | MALTDTAIRT ARPRDKLYRI ADAQGLCLEV TTAGGKLWRL RYRFEGKAKM LGLGTYPSVT
LAHARERRDA ARKLLSQGID PSAYKQQEKA AAEAQALTLE TLAREWYDYN QPRWAPATAS
KALQYLESDI FPLIGKRPAA EVQRPELVDL VRKIEQREAF NVARKVRQWL SQIFRFGLAK
GVVAGNPATD LDVVAAHAPR TRHHPHVSEA ELPELLEKLE AAQCDFTSKI AIRLLLLTAV
RPGELRLAPW DEFDLESATW TIPAARMKAR RPHIVPLPRQ AVNLLRALHE LTGTYPLAFP
GRNDRSRPMS ENTVNKALST MGYEGRQTGH GFRHLLSTSL NTRGYNRDWI ERQLAHGDQD
SIRDTYNHAH YLEQRREMMQ TWADHVDALA EQTSVVKFKA RA
|
|---|
| |