Gene PputW619_4263 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_4263 
Symbol 
ID6113232 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp4699366 
End bp4700859 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content60% 
IMG OID641624057 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001751112 
Protein GI170723424 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCAT CGCTCGTCCT AAAAATGGGC CAGCAACTGA CGATGACCCC GCAGTTGCAA 
CAGGCCATCC GCCTACTCCA GCTCTCTACC CTGGACCTTC AGCAGGAAAT CCAGGAAGCG
CTGGAGTCCA ATCCGATGCT CGAACGTCAG GAAGACGGCG AAGACTTCGA CAACAGCGAC
CCGATGGCGG ACAACGCCGA GAGCAAGCCG GCCGCCGAAG TCCAGGACAA CAGCTTTCAG
GAAAGCACCA CCAGTGCCGA GACCCTGGAA GACGGTGAGT GGAACGAGCG CATCCCCAAT
GAGCTTCCGG TCGACACGGC CTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCG
AGCAACGATG ACGACGAGTG GGACTTCACC ACCCGCACAT CAGCCGGCGA AAGCCTGCAA
AGCCACCTGC TGTGGCAGTT GAACCTGGCA CCGATGTCCG ATACCGACCG TCTGATCGCA
GTCACCCTTA TCGACAGCAT CAACGGCCAA GGTTATCTGG AAGACACGAT CGAAGAGATC
TGCGCCGGTT TCGATCCGGA GCTGGATATC GAGCTGGACG AAGTCGAAGC GGTGCTGCAC
CGTATCCAGC AGTTCGAGCC TGCAGGTGTC GGTGCACGCA ACCTGGGTGA GTGCCTGTTG
CTGCAACTGC GCCAACTACC GGCAAGCACT CCATGGATGG CCGAGGCCAA GCGCCTGGTC
ACCGAGTTCA TCGACCTGTT GGGTGGGCGC GACTACAGCC AGCTGATGCG CCGCATGAAG
CTCAAGGAGG ACGAGCTGCG CCAGGTCATC GAACTGGTTC AGAGCCTCAA CCCGCGCCCG
GGATCGCAAA TCGAGTCCAG TGAGCCGGAA TACGTGGTGC CCGATGTCAT CGTGCGCAAG
GACAGCGATC GCTGGCTGGT CGAACTGAAC CAGGAAGCGA TCCCGCGTCT GCGGGTCAAC
CCGCAATATG CCGGTTTCGT CCGCCGGGCC GACACCAGCG CCGACAACAC CTTCATGCGC
AACCAGTTGC AGGAAGCACG CTGGTTCATC AAGAGCCTGC AAAGCCGCAA CGAAACGCTG
ATGAAAGTCG CCACACAGAT CGTCGAGCAT CAGCGCGGCT TCCTGGACCA CGGCGACGAG
GCAATGAAAC CATTGGTACT GCATGACATC GCCGAAGCCG TGGGCATGCA CGAGTCGACC
ATCTCGCGGG TGACCACGCA GAAATTCATG CACACGCCAC GCGGCATCTA CGAACTGAAA
TACTTTTTCT CGAGCCATGT CAGCACCTCC GAGGGCGGAG AATGCTCGTC CACGGCAATC
CGCGCGATCA TCAAGAAACT GGTTGCGGCG GAAAATCAGA AAAAGCCATT GAGTGACAGC
AAGATCGCTG GTTTACTGGA GGCACAAGGC ATCCAGGTAG CCCGTCGCAC CGTCGCCAAG
TACCGCGAGT CTCTCGGCAT CGCACCGTCG AGCGAACGCA AGCGACTGAT GTAG
 
Protein sequence
MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGEDFDNSD 
PMADNAESKP AAEVQDNSFQ ESTTSAETLE DGEWNERIPN ELPVDTAWED IYQTSASSLP
SNDDDEWDFT TRTSAGESLQ SHLLWQLNLA PMSDTDRLIA VTLIDSINGQ GYLEDTIEEI
CAGFDPELDI ELDEVEAVLH RIQQFEPAGV GARNLGECLL LQLRQLPAST PWMAEAKRLV
TEFIDLLGGR DYSQLMRRMK LKEDELRQVI ELVQSLNPRP GSQIESSEPE YVVPDVIVRK
DSDRWLVELN QEAIPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLDHGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKFM HTPRGIYELK
YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLM