Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4263 |
Symbol | |
ID | 6113232 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 4699366 |
End bp | 4700859 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641624057 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001751112 |
Protein GI | 170723424 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCAT CGCTCGTCCT AAAAATGGGC CAGCAACTGA CGATGACCCC GCAGTTGCAA CAGGCCATCC GCCTACTCCA GCTCTCTACC CTGGACCTTC AGCAGGAAAT CCAGGAAGCG CTGGAGTCCA ATCCGATGCT CGAACGTCAG GAAGACGGCG AAGACTTCGA CAACAGCGAC CCGATGGCGG ACAACGCCGA GAGCAAGCCG GCCGCCGAAG TCCAGGACAA CAGCTTTCAG GAAAGCACCA CCAGTGCCGA GACCCTGGAA GACGGTGAGT GGAACGAGCG CATCCCCAAT GAGCTTCCGG TCGACACGGC CTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCG AGCAACGATG ACGACGAGTG GGACTTCACC ACCCGCACAT CAGCCGGCGA AAGCCTGCAA AGCCACCTGC TGTGGCAGTT GAACCTGGCA CCGATGTCCG ATACCGACCG TCTGATCGCA GTCACCCTTA TCGACAGCAT CAACGGCCAA GGTTATCTGG AAGACACGAT CGAAGAGATC TGCGCCGGTT TCGATCCGGA GCTGGATATC GAGCTGGACG AAGTCGAAGC GGTGCTGCAC CGTATCCAGC AGTTCGAGCC TGCAGGTGTC GGTGCACGCA ACCTGGGTGA GTGCCTGTTG CTGCAACTGC GCCAACTACC GGCAAGCACT CCATGGATGG CCGAGGCCAA GCGCCTGGTC ACCGAGTTCA TCGACCTGTT GGGTGGGCGC GACTACAGCC AGCTGATGCG CCGCATGAAG CTCAAGGAGG ACGAGCTGCG CCAGGTCATC GAACTGGTTC AGAGCCTCAA CCCGCGCCCG GGATCGCAAA TCGAGTCCAG TGAGCCGGAA TACGTGGTGC CCGATGTCAT CGTGCGCAAG GACAGCGATC GCTGGCTGGT CGAACTGAAC CAGGAAGCGA TCCCGCGTCT GCGGGTCAAC CCGCAATATG CCGGTTTCGT CCGCCGGGCC GACACCAGCG CCGACAACAC CTTCATGCGC AACCAGTTGC AGGAAGCACG CTGGTTCATC AAGAGCCTGC AAAGCCGCAA CGAAACGCTG ATGAAAGTCG CCACACAGAT CGTCGAGCAT CAGCGCGGCT TCCTGGACCA CGGCGACGAG GCAATGAAAC CATTGGTACT GCATGACATC GCCGAAGCCG TGGGCATGCA CGAGTCGACC ATCTCGCGGG TGACCACGCA GAAATTCATG CACACGCCAC GCGGCATCTA CGAACTGAAA TACTTTTTCT CGAGCCATGT CAGCACCTCC GAGGGCGGAG AATGCTCGTC CACGGCAATC CGCGCGATCA TCAAGAAACT GGTTGCGGCG GAAAATCAGA AAAAGCCATT GAGTGACAGC AAGATCGCTG GTTTACTGGA GGCACAAGGC ATCCAGGTAG CCCGTCGCAC CGTCGCCAAG TACCGCGAGT CTCTCGGCAT CGCACCGTCG AGCGAACGCA AGCGACTGAT GTAG
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Protein sequence | MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGEDFDNSD PMADNAESKP AAEVQDNSFQ ESTTSAETLE DGEWNERIPN ELPVDTAWED IYQTSASSLP SNDDDEWDFT TRTSAGESLQ SHLLWQLNLA PMSDTDRLIA VTLIDSINGQ GYLEDTIEEI CAGFDPELDI ELDEVEAVLH RIQQFEPAGV GARNLGECLL LQLRQLPAST PWMAEAKRLV TEFIDLLGGR DYSQLMRRMK LKEDELRQVI ELVQSLNPRP GSQIESSEPE YVVPDVIVRK DSDRWLVELN QEAIPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL MKVATQIVEH QRGFLDHGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKFM HTPRGIYELK YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS SERKRLM
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