| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4261 |
|---|
| Symbol | |
|---|
| ID | 6113230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 4697941 |
|---|
| End bp | 4698465 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641624055 |
|---|
| Product | lipopolysaccharide transport periplasmic protein LptA |
|---|
| Protein accession | YP_001751110 |
|---|
| Protein GI | 170723422 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCTCG TTAAAACCCT CCCCCTTTTG CTCAGCCTGA GCGCAGCACT GGGAAGCGCG
AGCGCCTTCG CCCTGCCGAC CGACCGTGAC CAGCCTATCC GCATCCAGGC CGACAACGCG
CACCTGGACG ACAAGCAAGG CGTAGCCACC TACACCGGTG ACGTGATCAT CACTCAGGGC
TCGATGATGA TCAAAGGCAA TACCGTGACC ATGACCCGCG CCGCCAACGG TGACATCGAC
GTGGTCACTT CGGTGGGCAA CCTGGCCTAT TTCGAGCAGC AGCAAAGCGC TGCAAAGCCT
GACAAGATGA AAGGCTGGGC CGTGACCATC CAGTATCAGG CACAAAAGGA CACAGTGATT
CTCACCGACC GCGCCAAGGT CGAAAACGAA GGCAACACCA CCGAAGGCGA AAAGATCGTC
TACAACACCA AGTCCCAGGT TGCGACCGCC GGTCGCGGCG GCAACGTGAC TCAGCCACGT
CAGCGCATCG ACATGGTGAT CCAGCCGAAG AAGAAGGCCG AGTAA
|
|---|
| Protein sequence | MRLVKTLPLL LSLSAALGSA SAFALPTDRD QPIRIQADNA HLDDKQGVAT YTGDVIITQG
SMMIKGNTVT MTRAANGDID VVTSVGNLAY FEQQQSAAKP DKMKGWAVTI QYQAQKDTVI
LTDRAKVENE GNTTEGEKIV YNTKSQVATA GRGGNVTQPR QRIDMVIQPK KKAE
|
|---|
| |