| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4227 |
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| Symbol | |
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| ID | 6113196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4663595 |
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| End bp | 4665190 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641624021 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_001751076 |
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| Protein GI | 170723388 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0941591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCAGGC TTGCCGGCAA TTGGGTTTAC CACTGCTCCC AAGGCATACT ACTGCCCTCC
CCGGCCATAA CCCCCCGCCT CCCCATGCGC ATCCATGTCA GCTTCATCGA CCGCGTCGGC
ATCACCCAGG AAGTCCTCGC CCTGCTCGGT GCCCGCAACC TCAACCTGGA CGCCGTAGAG
ATGGTGCCGC CGAACGTCTA CATCGACGCT CCGACCCTCA GCCCCGCCGT ACTCGAAGAA
CTGCACGACG CGCTGTTCGA AGTACATGGG GTACAGTCGG TAGACGTGGT CGATATCCTC
CCTGGCCAGC GCCGCCACCT GCAGCTCGAT GCCCTGCTCG CCGCCATGAG CGACCCGGTG
CTGGCCGTCG ACAGCGCAGG CCTGGTGCTG CTGGCCAACC CCGCGCTGAT CGCCCTGTGC
GGGCGTGAGT CAGCGGGGCG GTCTGTTGGC GAACTGTTCG GCGACCCCGG CCTGCTGCAG
GCGCTGCTGG ACAACAACTT CCACCTGCCG ATGCGCGAGA TGCAGCTCAA CGGCCAGAGC
CTGCTGCTCG ATGCCACGCC CATCACCAAC GCCGGCGGCC TGTTGACCCT GTACCCGCCC
AACCGCATGG GCGAGCGCCT GTCGGCCCTG CACCACGACC ACGCCGAAGG CTTCGATGCG
CTGCTCGGCG AGTCCCCTGC GATCCGCACC CTCAAGGCCC GCGCCCTGCG CGTAGCGGCC
CTGGATGCGC CCCTGCTGGT ACATGGCGAG ACCGGCACCG GCAAGGAACT GGTGGCCCGT
GCCTGCCATG CCATCAGCAG CCGGCAAGCG GCGCCTTTCC TGGCCCTCAA CTGCGCCGCG
CTGCCCGAGA GCCTGGCCGA GAGCGAACTG TTCGGCTACG CCCCAGGCGC TTTCACCGGC
GCCCAGCGCG GTGGCAAACC CGGGCTGATG GAGCTGGCCA ACCAGGGCAC GGTATTTCTC
GACGAGATCG GCGAAATGTC GCCGTACTTG CAAGCCAAGC TGTTGCGTTT TCTCAGTGAC
GGCAGCTTCC GCCGGGTGGG CGGCGACCGC GAGGTGAAGG TGGATGTGCG CATCATCAGC
GCCACCCACC GCGACCTGGA ACGCATGGTC GCCGAAGGCA CCTTCCGGGA AGACCTGTTC
TACCGCCTCA ACGTGCTCAA CCTGCAGGTG CCGCCCTTGC GCGACCGTGG CCAGGACATT
CTGATGCTCG CGCACTACTT CATGCAGCAG GCCTGCACGC AGATCCAGCG CCCGGCCTGC
CGACTGACCC CGGCTACGCA CTCGGCATTG CTGGCCAACC CTTGGCCGGG CAACGTGCGC
CAGCTGCAAA ACGTGATCTT CCGTGCCGCC GCCATCTGTG AAAGCAACCT GGTCGACATC
GGCGATCTGG ACATCGCCGG GACATCGGTG GCGCGTGGCC AGGATGGCGA GGTCGCGAGC
CTGGAACAGG CGGTGGGGGA TTTCGAACGT GAACTGCTGC AACGGTTATA TGCCAGCTAC
CCATCGACCC GGCAACTGGC GGGGCGCTTG CAGACTTCGC ATACCGCGAT AGCCCAGCGG
TTGCGTAAGT ATGGAATTCC CAAAGCGAAA ATTTAA
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| Protein sequence | MGRLAGNWVY HCSQGILLPS PAITPRLPMR IHVSFIDRVG ITQEVLALLG ARNLNLDAVE
MVPPNVYIDA PTLSPAVLEE LHDALFEVHG VQSVDVVDIL PGQRRHLQLD ALLAAMSDPV
LAVDSAGLVL LANPALIALC GRESAGRSVG ELFGDPGLLQ ALLDNNFHLP MREMQLNGQS
LLLDATPITN AGGLLTLYPP NRMGERLSAL HHDHAEGFDA LLGESPAIRT LKARALRVAA
LDAPLLVHGE TGTGKELVAR ACHAISSRQA APFLALNCAA LPESLAESEL FGYAPGAFTG
AQRGGKPGLM ELANQGTVFL DEIGEMSPYL QAKLLRFLSD GSFRRVGGDR EVKVDVRIIS
ATHRDLERMV AEGTFREDLF YRLNVLNLQV PPLRDRGQDI LMLAHYFMQQ ACTQIQRPAC
RLTPATHSAL LANPWPGNVR QLQNVIFRAA AICESNLVDI GDLDIAGTSV ARGQDGEVAS
LEQAVGDFER ELLQRLYASY PSTRQLAGRL QTSHTAIAQR LRKYGIPKAK I
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