Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4205 |
Symbol | |
ID | 6113174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 4637216 |
End bp | 4638559 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641623999 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_001751054 |
Protein GI | 170723366 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAACAGC GCAATCGCAT AAGGACCTTG GGCTCGCTGG CCCTGCTGGC CATGGTTGGG AGTAGCGGGG TGCAGGCCGC CGAGGCCTTC TCCAGCGAGT CGAAATGGAT GACCGGCGAC TGGGGCGGTA CTCGCACCGA ACTGCTGGAA AAAGGCTATG ACTTCACCCT CGACTATGTG GGCGAGGTCG CCGGTAACCT CAATGGTGGC TACAACGACG ACAAGACCGC ACGCTACAGT GACCAGTTCG CCCTCGGCGC GCACCTGGAC CTGCAGAAGA TCTTTGGCTG GCACGATGCC GAATTCAAGC TGGCAATCAC CGAGCGCAGT GGCCGCAACC TCTCCAATGA CCGCATCAGC GACCCCCGTG CCGGGCAGTT CAGTTCGGTG CAGGAGGTAT GGGGGCGCGG CCAGACTTGG CGTCTTACCC AGATGTGGGT CAAGCAGAAG TACTTTGACG GTGCCCTGGA TGTGAAATTC GGCCGTTTCG GCGAGGGCGA GGACTTCAAC AGCTTCCCTT GCGACTTCCA GAACCTGGCC TTCTGCGGAT CGCAGGTGGG CAACTGGGTC GGCGGCATCT GGTACAACTG GCCGGTCAGC CAGTGGGCGC TGCGGGTCAA GTACAACATC ACGCCAGAGT TCTTCGTGCA GGTCGGCGCG TTCGAGCAGA ACCCCTCCAA CCTGGAAACC GGCAACGGCT TCAAGCTCAG CGGCAGCGGC ACCAAGGGTG CGATCCTGCC GGTGGAGGCA GTCTGGTCGC CCAAAGTCAA CGGCCTGCCG GGCGAGTACC GCCTGGGCTA TTACTACAGC ACGGCTGATG CCGAAGACGT CTACGAGGAC GTCAATGGCA ACCCGCAAGG GATCAGCGGC GCCGGCTTCA AATCACACTC CAGCAAGCAC GGCTGGTGGG TGGTTGCGCA GCAGCAAGTC ACCGCCCACG GCGGCGACGT CAGCCGCGGT CTCAGCTTGT TCGCCAACTT CACCGTGCAC GACAAGGCCA CCAACGTGGT CGACAACTAC CAGCAGGTGG GGTTGGTCTA CAAAGGTGCC TTCGATGCCC GGCCCAAGGA TGATATCGGC TTTGGTGTCG CCCGCATTCA CGTCAACGAT GATGTGAAGA AGCGCGCCGA ACAGCTTAAC GCCCAGAGCG GCATCAATGA CTACGACAAC CCGGGCTTCG TGCCTTTGCA GCGCACCGAG TACAACGCCG AGCTCTATTA CGGCTTCCAT GTGACCAACT GGCTGACCGT GCGCCCGAAC CTTCAGTACA TCAAGAGCCC GGGTGGCGTG GATGAGGTGG ACAACGCGCT GGTCGCAGGG TTGAAGATTC AGTCGTCATT CTGA
|
Protein sequence | MEQRNRIRTL GSLALLAMVG SSGVQAAEAF SSESKWMTGD WGGTRTELLE KGYDFTLDYV GEVAGNLNGG YNDDKTARYS DQFALGAHLD LQKIFGWHDA EFKLAITERS GRNLSNDRIS DPRAGQFSSV QEVWGRGQTW RLTQMWVKQK YFDGALDVKF GRFGEGEDFN SFPCDFQNLA FCGSQVGNWV GGIWYNWPVS QWALRVKYNI TPEFFVQVGA FEQNPSNLET GNGFKLSGSG TKGAILPVEA VWSPKVNGLP GEYRLGYYYS TADAEDVYED VNGNPQGISG AGFKSHSSKH GWWVVAQQQV TAHGGDVSRG LSLFANFTVH DKATNVVDNY QQVGLVYKGA FDARPKDDIG FGVARIHVND DVKKRAEQLN AQSGINDYDN PGFVPLQRTE YNAELYYGFH VTNWLTVRPN LQYIKSPGGV DEVDNALVAG LKIQSSF
|
| |