| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4179 |
|---|
| Symbol | |
|---|
| ID | 6113148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4604734 |
|---|
| End bp | 4606182 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641623973 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001751028 |
|---|
| Protein GI | 170723340 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.262241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCCT ATCGCCTTGC GCGTCAGGCC GGGCTGGCCA TGGCCCCGGC GGATACCGGC
TGGCAGTTGT GGCTGCGCCG CGATGCCGAC AGTAACCAAC TGCAGGAACT GCTGCGTGTG
CATGGCCAGC CCGTGGCACT GCACTACCTG GAAGCTGCGG CGTTCGACGA ACGCCTCGGC
CAGTTGTATC AGGCCGGGGA TGCTGCCACC GAAGCACTGA TCGAAGGCAT TGGCGAACAG
GTTGATCTGG ACAGCCTGAT GAGCGAAATG CCGCGCATCG AGGACCTGCT CGAAAGCGAT
GATGAAGCCC CGGTGATCCG CCTGATCAAC GGCCTGTTCG GCCAGGCCCT GCGCCTGCGC
GCTTCGGACA TTCATATCGA GACCTTTGAG CAGAGCCTGG TGGTGCGCCT GCGTGTCGAC
GGCCACCTGC GTGAGGTGTT GCGCCCGCCG CGCGCGTTGT CGGCCATGCT GGTGTCGCGG
ATCAAGGTCA TGGCGCGCCT GGACATCGCC GAGAAGCGCC AGCCCCAGGA CGGTCGCATC
ACCTTGCGCG CCGCCGGGCG TGAGGTGGAC GTGCGCGTCT CGACCTTGCC CGGTATCCAT
GGCGAGCGCG TGGTGATGCG CGTGCTCGAC AAGCAGGCCA GCTTGCTGGC ACTGGGCAAC
CTGGGCATGC CCCCGGCAGT GCTGCACGGC CTGCGCAGCT GCCTGACAAG GCCCAACGGC
ATCGTGCTGT CCACCGGGCC GACCGGCTCG GGCAAGACCA CCACCCTGTA CGCCAGCCTC
AACAGCCTCA ATGATGGCAG CCGCAACATT CTCACCGTGG AGGACCCGGT GGAATACGCC
ATCGCCGGCA TTGGCCAGAC GGCCATCAAT CCGCGCGCCG GGCTGACCTT TGCCACTGGC
TTGCGCGCCA TCCTGCGCCA GGACCCGGAC GTGATCATGC TCGGCGAAAT CCGCGACCAG
GAAACTGCGC AGATCGCCGT GCAGGCCAGC CTCACCGGCC ACTTGGTACT GTCGACGTTG
CACACCAACA GCGCAGTGGG CGCGGTCACC CGCTTGCGCG ACATGGGCAT CGAGCCGTTC
CTGATCGCCT CATGCCTGCG TGGCGTGCTG GCCCAGCGCC TGGTGCGACG GCTGTGCCAT
TGCGCGGTGG CGCAGCCACT GCAGCCGGCC GAACGGGCGC TGTGGCCTGA GCTGGCGGCG
CTGGGCAGCA GCTACCACGC GGTGGGCTGC GAGCAGTGCC AGGGCACTGG CTATATCGGT
CGTTTGGGCC TGTACGAATT CGTCGAACTC GACGCCGGCC TGATCGGCCT GCTGTATGAC
GGCGCCAGTG AACTGGCCAT GCAGGAGTAC CTGGCCGAGC GCCGCCAGAG CCTGGTGGCG
ATGGCCAGTG ATTGCCTGGC CCGCGGCGAG ACCAGCCTGG CTGAAGTATT GCGTGTGGTG
CAGGGCTGA
|
|---|
| Protein sequence | MLPYRLARQA GLAMAPADTG WQLWLRRDAD SNQLQELLRV HGQPVALHYL EAAAFDERLG
QLYQAGDAAT EALIEGIGEQ VDLDSLMSEM PRIEDLLESD DEAPVIRLIN GLFGQALRLR
ASDIHIETFE QSLVVRLRVD GHLREVLRPP RALSAMLVSR IKVMARLDIA EKRQPQDGRI
TLRAAGREVD VRVSTLPGIH GERVVMRVLD KQASLLALGN LGMPPAVLHG LRSCLTRPNG
IVLSTGPTGS GKTTTLYASL NSLNDGSRNI LTVEDPVEYA IAGIGQTAIN PRAGLTFATG
LRAILRQDPD VIMLGEIRDQ ETAQIAVQAS LTGHLVLSTL HTNSAVGAVT RLRDMGIEPF
LIASCLRGVL AQRLVRRLCH CAVAQPLQPA ERALWPELAA LGSSYHAVGC EQCQGTGYIG
RLGLYEFVEL DAGLIGLLYD GASELAMQEY LAERRQSLVA MASDCLARGE TSLAEVLRVV
QG
|
|---|
| |