| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4169 |
|---|
| Symbol | |
|---|
| ID | 6113138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 4593263 |
|---|
| End bp | 4594942 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641623963 |
|---|
| Product | polypeptide-transport-associated domain-containing protein |
|---|
| Protein accession | YP_001751018 |
|---|
| Protein GI | 170723330 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.987649 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCCC GATACCGCCA CATCGCCAGC AGGCTGCTGG CCTGCTGTAT GACGAGTTTG
CTGGCTATGC CGCAGGCATT GGCGGACGAC CCTGCCAGCC TGCAACTGCG TGATCAACAG
CGAACATTGC GCCAGCTCGA GCTGCAACAG CGGCTGCAGC GCTGGCAGCG CCATCCAGCG
GCGCAAAACA GCGACGCCCC CTCGCCGAAC CCACCCAGCG ACAGCCGCTG CTGGGAGATC
ACCGGCGTTC GCCTGGCCGG CAACCGACAG CTTTCGGCAC AGGCGCTTGA ACCAGCCATC
CAGACGCTGA TAAAGCCCTG CATGGGCATC GCCGACATCA ACCGCGTGCT CAAGGCCATC
ACCCAGCGCT ACGTGCACGC CGGTTATCCG GCCAGCCGCC CCTATCTGCG GCAAGCGCCA
GAGCATGACG CGCCGCTGGA CATCGTCATC ATCGAAGGCT TCGTCGAGTC GATCGAGCTT
GCTGCCGAGC TGCCGCTCTC CCTGAACAGC GCATTCCCCC ACCTGCTGGG CAAACCCCTG
TACCTGCCAG ACCTTGAACA GGGGCTGGAC CAGCTCAACC GCCTGCGGGC CTACGAGCTC
AGTGTCGACC TGTTGCCAGG CGAACTGCAG GGCGGCACCC GGGTACTGCT GCAGCCTCGC
CAAGTGGATT CCCGTTGGCA CCTGGACAGC CGCTTCGATA ACCGGGGCAG CCCGCTGACC
GGGCGTAACC GCCTGAACCT CGGCATCGGT GTGGACAGCC CCTCGGGCCT GAACGACGAC
CTGCGCCTGT CACTTTCGAC AACGGTCATC GATGCTCCGG GGCGCAGCCA GGGCGTCACC
CTCTACTACA GCATCCCCTA CGGCCCATGG ACTTTCGCGC TCAATGTCGG CCTGCTGCGC
TACAACGCGC CGATTCCGCA GGGGCGGCAC GACAGCAACG GCAACAGCAG CTACCAGAGC
GTCAGCGCCG AGCGCATGCT CTGGCGCAAC CAGCACGGCA TGCTCAGCGC CAGCGCCCGG
CTGGACCGCA AACAACTGAT CAACCGCGCC GGCTCTGCAG TCATTGGCCT GCAGAGCCCC
ACCCTGACTA CCGTGGAGGC CGGGCTCAAC CTGCTCTGGC TTGACCACGG CCTGTGGAAC
GCCTACATCG GCGTCGCCCA AGGCACTCAC TGGCTGGGCG CCGAGCAACC CGCTCAGCAC
GCAGCTGCGC CGCAGCCCGA CTTTCGAAAA TACCGCGCCA GCCTGCTGCA CCTACGCCAG
GGGCCAGCGA ACTGGCCGTG GCGCTGGCAA AGCGAACTCG GCCTGCAGTA CAGCACCAAT
GTCTTGCCGG CCGTCGAGCA AATGTTGTTG AGCGACGATT CGGCGGTGCG TGGCTTTCGC
CTGCGTACCT ACAGTGGCGC CAGCGCCGCC GCCTGGCGCA ATACCTTCAG CCAACCGCTG
CCACTGCCCT GGACTACACC GGTTACGGTG CGCCCCTACC TGGGCCTGGA CCTGGGCTGG
GAACGGCTGG CGCAAGGCGC CTCGCCGCGC CGGCTGGCAG GAGCCACGGC GGGTATCGAA
GTGAACCTGC CGCACAGCCG CCTGCGCCTG GACTATCAGC GCGCCCTCTA TGCCAGCGAC
CTGCAGCGCC CGATGCTCGA ACCCGGATTC TGGGTACTTG AGTGGGCCCT GAACATCTGA
|
|---|
| Protein sequence | MPARYRHIAS RLLACCMTSL LAMPQALADD PASLQLRDQQ RTLRQLELQQ RLQRWQRHPA
AQNSDAPSPN PPSDSRCWEI TGVRLAGNRQ LSAQALEPAI QTLIKPCMGI ADINRVLKAI
TQRYVHAGYP ASRPYLRQAP EHDAPLDIVI IEGFVESIEL AAELPLSLNS AFPHLLGKPL
YLPDLEQGLD QLNRLRAYEL SVDLLPGELQ GGTRVLLQPR QVDSRWHLDS RFDNRGSPLT
GRNRLNLGIG VDSPSGLNDD LRLSLSTTVI DAPGRSQGVT LYYSIPYGPW TFALNVGLLR
YNAPIPQGRH DSNGNSSYQS VSAERMLWRN QHGMLSASAR LDRKQLINRA GSAVIGLQSP
TLTTVEAGLN LLWLDHGLWN AYIGVAQGTH WLGAEQPAQH AAAPQPDFRK YRASLLHLRQ
GPANWPWRWQ SELGLQYSTN VLPAVEQMLL SDDSAVRGFR LRTYSGASAA AWRNTFSQPL
PLPWTTPVTV RPYLGLDLGW ERLAQGASPR RLAGATAGIE VNLPHSRLRL DYQRALYASD
LQRPMLEPGF WVLEWALNI
|
|---|
| |