| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4151 |
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| Symbol | xerD |
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| ID | 6113120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4577877 |
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| End bp | 4578773 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641623945 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_001751000 |
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| Protein GI | 170723312 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.596099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCCC TTGACCACCC CTTGATCGAC CAGTTCCTTG ATGCCCTGTG GCTGGAAAAA
GGCCTTTCAG ACAACACTCG CGTCTCTTAT CGCAGTGACC TGGCGCTGTT CAACGGCTGG
CTGCAGGATC ACGGCCTGGC CTTGCCTGCC GCCGGTCGGG AGCTGATCCT CGATCACCTG
GCCTGGCGTC TGGATCAGGG TTACAAGCCG CGTTCCACTG CGCGTTTTCT CTCAGGTCTG
CGTGGCTTCT TTCGCTACTT GCTGCGGGAA AAGCTCATTG CCGTCGATCC AACCCTGCAA
ATAGAGATGC CGCAGTTGGG CAAGCCCTTG CCCAAGTCTT TGTCGGAAGC CGACGTCGAT
GCCCTGCTGC AGGCTCCGGA CCTTGGCGAA GCCATTGGCC AGCGCGACCG TGCCATGCTT
GAGGTCCTGT ACGCCTGTGG TCTGCGCGTT ACCGAACTGG TCAGCCTTGC TCTGGACCAG
GTGAACCTGC GCCAGGGCGT GCTGCGGGTG ATGGGCAAGG GCAGCAAGGA GCGCCTGGTA
CCGATGGGCG AAGAGGCGGT GCTGTGGCTG GAGCGCTACC TGCGTGACGG GCGCGTCGAG
CTGCTCAACG GGCGCCCGAG CGATGTGCTG TTCCCCAGCC TGCGGGGTGA ACAGATGACC
CGTCAGACCT TCTGGCACCG CATCAAGCAT CACGCCCGGA TTGCCGGCAT CGACAAGCCG
CTGTCGCCGC ACACCTTGCG CCACGCTTTC GCCACCCATC TGCTCAACCA CGGTGCGGAC
CTGCGCGTAG TGCAGATGCT GCTGGGGCAC AGCGACCTGT CGACCACGCA GATCTATACC
CATGTGGCCA AGGCCCGCCT GCAGCAACTG CACGCTCAGC ACCATCCGCG TGGATGA
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| Protein sequence | MPALDHPLID QFLDALWLEK GLSDNTRVSY RSDLALFNGW LQDHGLALPA AGRELILDHL
AWRLDQGYKP RSTARFLSGL RGFFRYLLRE KLIAVDPTLQ IEMPQLGKPL PKSLSEADVD
ALLQAPDLGE AIGQRDRAML EVLYACGLRV TELVSLALDQ VNLRQGVLRV MGKGSKERLV
PMGEEAVLWL ERYLRDGRVE LLNGRPSDVL FPSLRGEQMT RQTFWHRIKH HARIAGIDKP
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVAKARLQQL HAQHHPRG
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