| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4135 |
|---|
| Symbol | |
|---|
| ID | 6113104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 4563378 |
|---|
| End bp | 4564184 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641623929 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001750984 |
|---|
| Protein GI | 170723296 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCTG AAAAAGCCTC CACCGGCCTG CGCCTGGCGG CTTGGGGCGG GTTATTGTTC
CTGCACTTTC CGATCCTCAT CATCTTCCTG TACGCCTTCA ACACCGAAGA TGCGGCGTTC
AGCTTCCCGC CCAAGGGCTT CACCCTCAAA TGGATCGCCG TGGCATTCGC CCGGCCGGAC
GTGCTCGAGG CCATCAAGCT GTCGCTGCAG GTGGCCAGCC TGGCCACGCT CATCGCGCTT
GTGCTCGGCA CCCTGGCCGC GGCGGCACTG TACCGGCGCA GCTTCTTCGG CAAGGAGAGC
ATCTCGCTGA TGCTGATCTT GCCGATCGCA CTGCCTGGCA TCATTACCGG CATAGCCCTG
TTGTCGGCGT TCAAGGCCCT GGGTATCGAG CCTGGGCTGT TCACCATCGT GGTCGGCCAC
GCCACCTTCT GTGTGGTGAT CGTCTACAAC AATGTGATTG CCCGCCTGCG GCGCACCTCG
CAAAGCCTGA TCGAAGCCTC TATGGACTTG GGGGCCGATG GTTGGCAGAC CTTCTGCTAC
ATCATCCTGC CCAACCTAGG CTCGGCGCTG CTGGCCGGCG GCATGCTGGC CTTCGCCCTG
TCGTTCGACG AGATCATCGT CACCACCTTC ACTGCCGGTA ACGAGCGTAC CTTGCCCATC
TGGCTGCTCA ACCAACTCAG CCGCCCGCGC GAAGTGCCGG TGACCAACGT GGTTGCCATG
CTGGTGATGC TGGTGACCAT GCTGCCGATC CTCGGCGCCT ACTACCTGAC CCGCGGCGGT
GAAAGCGTTG CGGGCAGCGG CAAATGA
|
|---|
| Protein sequence | MHSEKASTGL RLAAWGGLLF LHFPILIIFL YAFNTEDAAF SFPPKGFTLK WIAVAFARPD
VLEAIKLSLQ VASLATLIAL VLGTLAAAAL YRRSFFGKES ISLMLILPIA LPGIITGIAL
LSAFKALGIE PGLFTIVVGH ATFCVVIVYN NVIARLRRTS QSLIEASMDL GADGWQTFCY
IILPNLGSAL LAGGMLAFAL SFDEIIVTTF TAGNERTLPI WLLNQLSRPR EVPVTNVVAM
LVMLVTMLPI LGAYYLTRGG ESVAGSGK
|
|---|
| |