| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4094 |
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| Symbol | |
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| ID | 6113063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4521044 |
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| End bp | 4522195 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641623888 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001750943 |
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| Protein GI | 170723255 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.176318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCCC CAGCCGAGCT CTCGCCTACC CTTCAACTGG CCTGCGACCT GATCCGTCGC
CCCTCGGTCA CCCCTGTCGA CGCCGACTGC CAGGCGCAGA TGATGAAGCG CCTGGGTGCC
GTGGGCTTCC AGCTCGAACC GATGCGCATC GAGGACGTCG ACAACTTCTG GGCCACCCAT
GGTAACCAGG ACGGCCCGGT GCTGTGCTTC GCCGGCCACA CCGATGTGGT CCCCACCGGC
CCGGTGCAGC AGTGGCAGCA TGAGCCGTTC GAGGCACTGA TCGATGCCGA CGGCATGCTC
TGCGGTCGCG GCGCCGCCGA CATGAAGGGC AGCCTGGCCT CCATGGTGGT CGCCAGTGAG
CGTTTCGTGC AGGACTACCC GAACCACCGC GGCAGGGTCG CCTTCCTGAT CACCAGCGAT
GAAGAAGGCC CGGCCCATCA CGGTACCAAG GCCGTGGTCG AGCGCCTGAT CGCGCGCAAC
GAGCGCCTGG ACTGGTGCAT CGTCGGCGAG CCGTCGAGCA CTACCCTGCT CGGTGACGTG
GTCAAGAACG GCCGCCGGGG CTCGCTCGGC GCCAAACTGA CCGTGCGCGG CAAACAAGGC
CACGTGGCCT ACCCGCACCT GGCGCGCAAC CCGATCCACC TGGCCGCGCC AGCGCTGGCG
GAGCTGGCCG CCGAACACTG GGATGAAGGC AACGCGTTCT TCCCACCGAC CAGCTTCCAG
ATCTCCAACC TCAACTCCGG TACCGGCGCC ACCAATGTGG TACCGGGTGA TCTGATCGCG
GTGTTCAATT TCCGCTTCTC CACCGAGTCG ACGGTCGAAG GCCTGCAGGC GCGGGTATCG
GCAATCCTCG ACAAGCATGA ACTGGACTGG TCGATCGACT GGGCGCTTTC GGGCCTGCCA
TTCCTGACCG AGCCCGGTGA ACTGCTCGAT GCCGTGTCGG CCAGCATCAA GGGCGTCACC
GGCCGTGATA CCCAGCCGTC CACCAGCGGT GGTACGTCCG ATGGCCGGTT CATCGCCACC
ATGGGCACCC AGGTCGTCGA ACTGGGCCCG GTCAATGCAA CGATCCACCA GGTCGACGAG
CGCATTCTGG CCAGCGACCT CGACCTGCTG ACCGAGATCT ACTACCAGAC CCTGGTGCGG
TTGCTCGCCT GA
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| Protein sequence | MTAPAELSPT LQLACDLIRR PSVTPVDADC QAQMMKRLGA VGFQLEPMRI EDVDNFWATH
GNQDGPVLCF AGHTDVVPTG PVQQWQHEPF EALIDADGML CGRGAADMKG SLASMVVASE
RFVQDYPNHR GRVAFLITSD EEGPAHHGTK AVVERLIARN ERLDWCIVGE PSSTTLLGDV
VKNGRRGSLG AKLTVRGKQG HVAYPHLARN PIHLAAPALA ELAAEHWDEG NAFFPPTSFQ
ISNLNSGTGA TNVVPGDLIA VFNFRFSTES TVEGLQARVS AILDKHELDW SIDWALSGLP
FLTEPGELLD AVSASIKGVT GRDTQPSTSG GTSDGRFIAT MGTQVVELGP VNATIHQVDE
RILASDLDLL TEIYYQTLVR LLA
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