| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4072 |
|---|
| Symbol | lpxD |
|---|
| ID | 6113041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4495378 |
|---|
| End bp | 4496433 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641623866 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| Protein accession | YP_001750921 |
|---|
| Protein GI | 170723233 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.125317 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTGA CCATGACGCT CGGCCAGTTG GCCGAGGCCC TCGGGGCCAC TCTCAAAGGC
TCCGAGGCGC TGCAGATCAC CGGTCTGGCC ACCTTGCAGG AGGCCGGCCC CGGTCAGTTG
AGCTTTCTCG CCAACAAGCA GTACCGCAAA TACCTGGATA ACTGCCAGGC AGCAGCGGTG
CTGCTGCAGG CTGCAGATGC CGAAGGCTTT GCCGGCAATG CGCTGATCGT GGCGGACCCG
TACCTGGCCT ACGCGCGCAT TTCCCACCTG TTCGATCCCA AGCCCAAGGC TGTAGCGGGA
ATTCATCCCA GCGCCGTGGT TGCCGAGGAT GCGCAGGTGG ATGCCAGTGC CAGCATTGGG
CCGTTCGTGG TCATCGAGAG TGGCGCACGC ATTGGCGCCA ACGTCAGCAT CGGTGCGCAT
TGCGTGATCG GCGCCCGTTG TGTGGTTGGT GAGGGTGGCT GGCTGGCACC GCGGGTCACG
CTGTATCACG ACGTGACCAT AGGCAAGCGC GTGGTCATCC AGTCTGGCGC GGTGATCGGT
GGTGAGGGCT TCGGCTTTGC CAACGAGAAG GGCGTATGGC GCAAGATCGC CCAGATCGGC
GGTGTCACCA TAGGTGATGA CGTCGAAATC GGTGTGAACA CCGCTGTCGA CCGGGGCGCG
TTGTCCGACA CGCGGATCGC CGACGGCGTC AAGCTCGACA ACCAGATCCA GATCGCTCAC
AACGTGCAGA TCGGTGAGCA CACGGCCATG GCTGCCTGCG TCGGGATTTC CGGCAGCACG
CGCATTGGCA AACACTGCAC CATTGCCGGT GGCGTCGGCA TGGTGGGGCA CATTGATGTC
TGCGACAACG TATTCGTTTC CGGGATGACC ATGGTCACCC GTTCGATCAC CGAACCGGGT
GCGTATTCTT CCGGCACTGC CATGCAGCCA CTGGCTGACT GGCGCAAGAG CGCTGCGCGT
ATCCGCCAGC TGGATGACAT GTCCAAACGT CTCCAGCAGC TGGAAAAACG TGTCGATACC
GTGACCTCAG GTGGCCAGCC GACATCAGAA GGCTGA
|
|---|
| Protein sequence | MTVTMTLGQL AEALGATLKG SEALQITGLA TLQEAGPGQL SFLANKQYRK YLDNCQAAAV
LLQAADAEGF AGNALIVADP YLAYARISHL FDPKPKAVAG IHPSAVVAED AQVDASASIG
PFVVIESGAR IGANVSIGAH CVIGARCVVG EGGWLAPRVT LYHDVTIGKR VVIQSGAVIG
GEGFGFANEK GVWRKIAQIG GVTIGDDVEI GVNTAVDRGA LSDTRIADGV KLDNQIQIAH
NVQIGEHTAM AACVGISGST RIGKHCTIAG GVGMVGHIDV CDNVFVSGMT MVTRSITEPG
AYSSGTAMQP LADWRKSAAR IRQLDDMSKR LQQLEKRVDT VTSGGQPTSE G
|
|---|
| |