| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4067 |
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| Symbol | dnaE |
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| ID | 6113036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4488683 |
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| End bp | 4492207 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641623861 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001750916 |
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| Protein GI | 170723228 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00239215 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGGTTC CCTTCGTTCA CCTGCGCGTC CACTCCGAAT TCTCGCTGGT CGACGGTCTG
GTGCGGATCA AACCGCTGGC CAAGGCGCTG GCCGGGATGA ACATGCCTGC GGTGGCGATC
ACCGACCAGA GCAACATGTG CGCGTTGGTG AAGTTCTACA AGGCCGCCAT GGGGGCGGGT
ATCAAGCCGA TCTGCGGTGC TGACCTGTGG CTGGCCGGTG CCGACCCTGA AGCGCCGCTG
TCGCGCATCT GCTTCCTGGC GATGAACCCC AAGGGTTACC GTAACCTTAC CGAGCTGATC
TCCCGGGGCT GGACTGACGG CCAACGCAAT GGTCTGGTCA TTCTGCAGCG TGAGTGGATC
GCCCCGGCTA GCGAAGGTCT GATTGCCCTG TCCGCAGGCA AAGAGGGCGA TATCGGCATG
GCCCTGATGG CCGGCCGGAC GACTGAGGCC GAGGCGCTGC TGCACGACTG GATGGGCATG
TTCCCCGAGC GTTTTTACGT CGAGGTGCAG CGTACCAATC GTGTCGGTGA TGAAGAATAC
GTGCACGCTG CCGTGGCGCT GGCCGACAAG GTCGGCGCGC CGCTGGTGGC CACCAATGAT
GTGCGTTTTA TCAAGCAGTC GGACTTCGAC GCCCACGAAA GCCGCGTGTG CATCGGTGAA
GGCTGGACCC TGGACGACCC ACGTCGCCCG CGCATGTACA GCGACCAGCA GTACCTCAAA
AGCGCGGATG AAATGGCCGA GCTGTTCAGC GATCTGCCCG ACGCCATTGC CAACACCGTC
GAAATCGCCA AACGCTGCAA CATCCAGGTG CAGCTGGGCA AGTACTTCCT GCCCGATTTC
CCGACGCCCA ATGGCATGGG CATCGACGAT TACTTGCGCC ATGTCTCGCA CGAAGGCCTG
GAGGAGCGCC TGGCGGTGCT CTGGCCCAAG GAGACCACGC CCAATTACGA AGAGAAGCGC
CAGGTCTACC TGGACCGCTT GAAGTTCGAG CTGGACATCA TCATCCAGAT GGGTTTCCCG
GGTTACTTCC TGATCGTTAT GGACTTCATC AAGTGGGCCA AGAACAACGG CGTGCCGGTA
GGCCCGGGCC GTGGTTCGGG TGCCGGCTCG CTGGTGGCCT ACGTACTTAA GATCACCGAC
CTCGATCCTC TGGCCTACGA CCTGCTGTTC GAACGTTTCC TCAACCCTGA ACGTGTTTCC
ATGCCCGACT TCGACGTCGA CTTCTGCATG GATGGCCGCG ACCGGGTGAT CGACTACGTG
GCCGACGCCT ACGGGCGCAA TGCGGTCAGC CAGATCATCA CCTTCGGTAC CATGGCCGCC
AAGGCGGTGG TACGCGACGT GGCGCGGGTG CAGGGCAAGT CCTACGGCCT GGCTGATCGT
TTGTCGAAGA TGATCCCGTT CGAAGTGGGC ATGACCCTGG AGAAGGCGTA TGAGCAGGAA
GAGATCCTGC GCGACTTCCT CAAGGGCGAC GAAGACGCCC GCGAAATCTG GGACATGGCG
CTCAAGCTAG AAGGTGTCAC CCGTGGTACC GGCAAGCACG CCGGTGGTGT GGTAATCGCC
CCGACCAAGC TCACCGATTT CTCGCCGATC GCCTGTGATG AAGAGGGCGG CGGCCTGGTG
ACCCAGTTCG ACAAGGACGA TGTCGAGGCC GCCGGCCTGG TCAAGTTCGA CTTCCTTGGC
CTGCGGACCC TGACCATCAT CAAGTGGGCG ATGGAGACGA TCAACCGCGA GCAGGCCAAG
AACAACCTGC CCGACGTCAA CATCGACTTC ATCCCGCTGG ACGATCGCAA GACCTACGAG
TTGCTGCAGA AGGCCGAAAC CACGGCGGTA TTCCAGCTCG AATCGCGCGG CATGAAGGAG
CTGATCAAAA AGCTCAAGCC CGACTGCCTG GAAGACCTTA TCGCACTGGT GGCATTGTTC
CGCCCAGGCC CCCTGCAATC GGGCATGGTG GACGACTTCA TCAACCGCAA GCACGGCCGC
GCCGAACTTG CCTACCCGCA CTCGGACTAC CAGTACGAAG GCCTCAAGCC TGTTCTTGCG
CCGACCTACG GCATCATCCT GTATCAGGAG CAGGTGATGC AGATTGCACA GGTCATGGCG
GGGTACACCC TCGGCGGCGC CGACATGCTG CGTCGCGCCA TGGGTAAGAA AAAGCCTGAG
GAAATGGCCA AGCAGCGCGG CGGTTTCATC GAGGGTTGCG TCGCCAACAA CATTGATGCA
GACCTCGCCG GCAACATCTT CGACCTGGTG GAAAAGTTTG CCGGTTACGG CTTCAACAAG
TCCCACTCGG CGGCCTACGG TCTGGTGTCT TACCAGACCG CCTGGCTCAA GACTCATTAT
CCGGCGCCGT TCATGGCCGC GGTCCTCTCG GCGGACATGC ACAACACCGA CAAGGTGGTG
GTGCTGATCG AAGAAGTGCG CAGCATGAAG CTGCGCCTCG ATGCGCCCGA CGTGAATGCC
TCGGAGTTCA AGTTCACGGT CAATGACGAC GGCCGCATCA TCTATGGCCT AGGCGCCATC
AAAGGCGTGG GTGAAGGCCC GGTGGAGGCC ATTGTCGAGG CACGCGACCA GGGTGGCCCA
TTCAAGGATC TTTTCGACTT CTGTGAGCGG GTCGACCTCA AGCGGGTGAA CAAACGCACA
CTTGATGCGC TGATCCGCAG TGGCGCACTG GACCGGCTGG GCCCGCACTT TCATGATGAG
ATCAAGGCCT ACCACGCCAG TATCGACATT AATCGCGCGA CCTTGCTGTC TGCCCTCGAA
GAAGCGATCA AGGCCGCTGA GCAGACCGCG CGCACTGCAG ACAGCGGTCA CGTCGACCTG
TTCGGCGGGC TGTTCGTCGA GGAGGACTCC GATGTCTACG CCAACCACCG CAAGGTGCGT
GAACTGACGC TCAAGGAGCG TCTGAAGGGC GAAAAGGATA CCCTTGGCGT ATATCTCACC
GGCCACCCGA TCGATGAATA TGAAGGGGAA ATCCGTCGTT TCGCCCGCCA GCGCATCATC
GATCTGAAAC CCTCCCGCGA GACGCAGACT ATCGCCGGCA TGATCATTGC GATGCGGGTG
ATGAAGAACA AGAAGGGCGA CAAGATGGGC TTTGTCACCC TCGATGACCG CTCCGGGCGC
ATCGAAGCGT CGCTGTTCGC CGATGCCTTC ATGGGGGCTC AGGCGTTGTT GCAGAACGAT
GCCATGGTCG TGGTTGAGGG TGAGGTCAGC AATGACGACT TCTCCGGTGG CCTGCGCCTG
CGCGTCAAGC AGGTGATGAC CATGGAAGAT GCCCGTACCA AGCTGGCCGA GAGCCTGCGC
CTGAAGATCA CCCACGATGC CCTCAAGGGC GACCGCCTGA ACTGGCTGGG CGAGCTGATC
ACCCGCCATC GCGGTGGTTG CCCGATCACC CTCGAATACA CCGGCAGCGA CGCCAAGGCG
ATGCTGCAGT TCGGCGACCA GTGGTCGATC GACCCGGCCG ATGGCTTGAT TCAGGCGCTG
CGTGACCAGT TCGGGCGTGA GAACGTCTTC CTGCAATATC GTTGA
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| Protein sequence | MSVPFVHLRV HSEFSLVDGL VRIKPLAKAL AGMNMPAVAI TDQSNMCALV KFYKAAMGAG
IKPICGADLW LAGADPEAPL SRICFLAMNP KGYRNLTELI SRGWTDGQRN GLVILQREWI
APASEGLIAL SAGKEGDIGM ALMAGRTTEA EALLHDWMGM FPERFYVEVQ RTNRVGDEEY
VHAAVALADK VGAPLVATND VRFIKQSDFD AHESRVCIGE GWTLDDPRRP RMYSDQQYLK
SADEMAELFS DLPDAIANTV EIAKRCNIQV QLGKYFLPDF PTPNGMGIDD YLRHVSHEGL
EERLAVLWPK ETTPNYEEKR QVYLDRLKFE LDIIIQMGFP GYFLIVMDFI KWAKNNGVPV
GPGRGSGAGS LVAYVLKITD LDPLAYDLLF ERFLNPERVS MPDFDVDFCM DGRDRVIDYV
ADAYGRNAVS QIITFGTMAA KAVVRDVARV QGKSYGLADR LSKMIPFEVG MTLEKAYEQE
EILRDFLKGD EDAREIWDMA LKLEGVTRGT GKHAGGVVIA PTKLTDFSPI ACDEEGGGLV
TQFDKDDVEA AGLVKFDFLG LRTLTIIKWA METINREQAK NNLPDVNIDF IPLDDRKTYE
LLQKAETTAV FQLESRGMKE LIKKLKPDCL EDLIALVALF RPGPLQSGMV DDFINRKHGR
AELAYPHSDY QYEGLKPVLA PTYGIILYQE QVMQIAQVMA GYTLGGADML RRAMGKKKPE
EMAKQRGGFI EGCVANNIDA DLAGNIFDLV EKFAGYGFNK SHSAAYGLVS YQTAWLKTHY
PAPFMAAVLS ADMHNTDKVV VLIEEVRSMK LRLDAPDVNA SEFKFTVNDD GRIIYGLGAI
KGVGEGPVEA IVEARDQGGP FKDLFDFCER VDLKRVNKRT LDALIRSGAL DRLGPHFHDE
IKAYHASIDI NRATLLSALE EAIKAAEQTA RTADSGHVDL FGGLFVEEDS DVYANHRKVR
ELTLKERLKG EKDTLGVYLT GHPIDEYEGE IRRFARQRII DLKPSRETQT IAGMIIAMRV
MKNKKGDKMG FVTLDDRSGR IEASLFADAF MGAQALLQND AMVVVEGEVS NDDFSGGLRL
RVKQVMTMED ARTKLAESLR LKITHDALKG DRLNWLGELI TRHRGGCPIT LEYTGSDAKA
MLQFGDQWSI DPADGLIQAL RDQFGRENVF LQYR
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