| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4061 |
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| Symbol | ispD |
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| ID | 6113030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4481763 |
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| End bp | 4482470 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641623855 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001750910 |
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| Protein GI | 170723222 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0000246321 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAA CCCTGCCGGC CTTCTGGGCC GTGATTCCTG CTGCGGGCGT AGGTGCCCGC
ATGGCTGCCG ACCGCCCGAA GCAGTATTTG CAATTGGGTG GGCAGACCCT TCTCGAGCAT
AGCCTCGACT GTTTTCTCGG CCATCCGACG CTCAAGGGTG TTGTGGTCAG CATTGCTGCG
GATGATCCTT ACTGGCCGGG CTTGCGCTGC GCCAGCGATC CCCGCATCCA GCGTGCGTCG
GGTGGGCGTG AACGCGCCGA CTCGGTGCTC AATGCCCTGT TGCTGTTGCA TGCCCAAGAT
GCGGCGGACA CTGACTGGGT GTTGGTGCAC GATGCGGCGC GGCCGAACCT GGCTCGTACG
GATCTTGACC GTTTGTTGTC GGAATTGGCT GATGACCCGG TAGGTGGGCT GCTGGCGGTC
CCTGCGCGAG ACACGCTGAA GCGCGCCGAT GCCAATGGGC GGGTCAGTGC TACTGTGGAT
CGCAGCACCA TCTGGCAGGC TTACACGCCG CAGATGTTCC GCCTTGGGGC TTTGCATCGG
GCCTTGGCCG AGTGCCTGGT GTCCGACGTG GTAGTCACCG ATGAAGCTTC GGCCATCGAA
TGGTCCGGCC AGGCGCCGCG GCTGATCGAA GGGCGCAGCG ACAACATCAA GGTGACCCGC
CCGGAAGACC TGGAGTGGCT GCGCCAGCGT TGGGCAGGGC GCCGCTGA
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| Protein sequence | MIKTLPAFWA VIPAAGVGAR MAADRPKQYL QLGGQTLLEH SLDCFLGHPT LKGVVVSIAA
DDPYWPGLRC ASDPRIQRAS GGRERADSVL NALLLLHAQD AADTDWVLVH DAARPNLART
DLDRLLSELA DDPVGGLLAV PARDTLKRAD ANGRVSATVD RSTIWQAYTP QMFRLGALHR
ALAECLVSDV VVTDEASAIE WSGQAPRLIE GRSDNIKVTR PEDLEWLRQR WAGRR
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