Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_4057 |
Symbol | ispF |
ID | 6113026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | - |
Start bp | 4478028 |
End bp | 4478501 |
Gene Length | 474 bp |
Protein Length | 157 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641623851 |
Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | YP_001750906 |
Protein GI | 170723218 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00000202691 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTATTG GCCACGGCTA CGATGTGCAC CGTTTTTGCG ACGGTGATTT CATTACCCTG GGTGGGGTGC GTATCCCCCA CAAATACGGC CTCCTGGCCC ACTCCGACGG TGACGTGCTG CTGCATGCCC TGAGCGATGC CTTGCTTGGC GCGGCGGGTC TGGGTGACAT CGGCAAGCAC TTCCCCGATA CGGACCCGCA ATTCAAGGGC GCCGACAGTC GCGTACTGCT ACGCCATGTG GTCGGCATCG TCCAGGCCAA AGGCTGGAAA GTCGGTAATG TCGACGCCAC CATCGTTGCC CAGGCGCCGA AAATGTCTCC GCATATCGAA ACCATGCGCC AACGGATCGC CGAGGACCTG CAGGTCGAAC TCGACCAGGT CAACGTCAAG GCCACCACCA CCGAGAAACT GGGCTTCACC GGCCGCGAGG AGGGTATCGC CGTGCATGCG GTCGCCCTGC TGCTGCCAGC ATGA
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Protein sequence | MRIGHGYDVH RFCDGDFITL GGVRIPHKYG LLAHSDGDVL LHALSDALLG AAGLGDIGKH FPDTDPQFKG ADSRVLLRHV VGIVQAKGWK VGNVDATIVA QAPKMSPHIE TMRQRIAEDL QVELDQVNVK ATTTEKLGFT GREEGIAVHA VALLLPA
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