| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4016 |
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| Symbol | rimO |
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| ID | 6112985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4442951 |
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| End bp | 4444282 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641623810 |
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| Product | ribosomal protein S12 methylthiotransferase |
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| Protein accession | YP_001750865 |
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| Protein GI | 170723177 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.588155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00937866 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCACCA CTCCCGCCAC CCCCAAGGTA GGGTTCGTCA GCCTGGGTTG CCCAAAAGCC
CTGGTAGATT CCGAGCGCAT TCTGACCCAG TTGCGTATGG AAGGTTATGA AGTCGTGCCC
ACCTACGAGG ACGCCGACGT GGTGGTGGTC AACACCTGCG GCTTCATCGA CAGTGCCAAG
GCCGAGTCGC TTGAAGTGAT CGGCGAAGCG ATCAAGGAAA ATGGCAAGGT CATCGTCACC
GGCTGCATGG GTGTCGAGGA AGGCAGTATC CGTGACGTGC ACCCGAGCGT GCTGTCGGTC
ACTGGCCCGC AGCAGTACGA GCAGGTAGTC AACGCCGTGC ACGAAGTGGT ACCGCCACGC
CAGGACCACA ACCCGCTGAT CGACCTGGTG CCACCGCAGG GCGTCAAACT GACCCCGCGC
CACTACGCCT ACCTGAAGAT CTCCGAAGGC TGCAACCATA GCTGCAGCTT CTGCATCATC
CCGTCGATGC GCGGCAAGCT GGTCAGCCGC CCGGTCGGCG AAGTGCTGAG CGAAGCCGAA
CGCCTGGTCA AGGCCGGCGT CAAGGAAATC CTGGTGATCT CCCAGGACAC CAGCGCCTAC
GGCGTCGACG TCAAGTACAA GACCGATTTC TGGAACGGCC GCCCGGTCAA GACCCGCATG
CTCGAGCTGT GCGAAGCGCT GAGTAGCCTG GGCGCCTGGG TGCGGCTGCA CTACGTCTAT
CCGTACCCGA ACGTGGACGA CGTGATCCCG CTGATGGCCG CCGGCAAGAT CCTGCCGTAC
CTGGATATTC CATTCCAGCA CGCCAGCCCC AAAGTGCTAA AGTCGATGAA GCGCCCTGCC
TTCGAAGACC GCACCCTGGC GCGCATCAAG AACTGGCGCG AGCAGTGCCC GGAACTGGTG
ATCCGCTCGA CCTTCATCGT CGGCTTCCCG GGCGAGACCG AAGAAGACTT CCAGTACCTG
CTGGATTGGC TGACAGAAGC CCAGCTCGAC CGCGTCGGCT GCTTCCAGTA CTCGCCAGTC
GAAGGCGCGC CTGCCAACGA CCTGGGCCTG GAAGAAGTGC CTGATGACGT CAAGCAGGAG
CGCTGGGACC GCTTCATGGC CCACCAGCAG GCCATCAGCA GCGCACGCCT GCAATTGCGT
ATTGGCAAGG AAATCGAAGT GCTGATCGAC GAAGTCGAAG AGCAAGGCTC GGTTGGCCGC
AGCTTCTTCG ATGCACCTGA GATCGATGGC AGCGTGTTCA TCGATGGCGA CCATGGCCTC
AAGCCGGGCG ACAAGGTCCG TTGCCGGGTG GTCGATGCCG ACGAGTATGA CATGTGGGCC
GAGCCTGTTT GA
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| Protein sequence | MSTTPATPKV GFVSLGCPKA LVDSERILTQ LRMEGYEVVP TYEDADVVVV NTCGFIDSAK
AESLEVIGEA IKENGKVIVT GCMGVEEGSI RDVHPSVLSV TGPQQYEQVV NAVHEVVPPR
QDHNPLIDLV PPQGVKLTPR HYAYLKISEG CNHSCSFCII PSMRGKLVSR PVGEVLSEAE
RLVKAGVKEI LVISQDTSAY GVDVKYKTDF WNGRPVKTRM LELCEALSSL GAWVRLHYVY
PYPNVDDVIP LMAAGKILPY LDIPFQHASP KVLKSMKRPA FEDRTLARIK NWREQCPELV
IRSTFIVGFP GETEEDFQYL LDWLTEAQLD RVGCFQYSPV EGAPANDLGL EEVPDDVKQE
RWDRFMAHQQ AISSARLQLR IGKEIEVLID EVEEQGSVGR SFFDAPEIDG SVFIDGDHGL
KPGDKVRCRV VDADEYDMWA EPV
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