| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3900 |
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| Symbol | |
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| ID | 6112864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4333207 |
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| End bp | 4334340 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641623689 |
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| Product | ribonuclease D |
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| Protein accession | YP_001750749 |
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| Protein GI | 170723061 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.946881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCATCG AAATACACTG GATCCGTGAC GACCAGACCC TGGCCGAACT CTGCCAGAGG
TGGCGCACAT TGCCCTTTGT GGCGCTCGAC ACCGAATTCA TGCGGGTCGA CACCTTCTAC
CCGAAAGCCG GCCTGATCCA GATCGGTGAC GGCGAGCGGG CTTATCTCAT CGACCCGTTG
CTGATCGTCG ACTGGCAGCC GCTGGGCGAA CTGCTAGAGG ATGCCGGCGT GGTCAAGGTG
CTGCATGCCT GCAGCGAAGA CCTCGAAGTG CTGCTGCGCC TGACCGGCAA GCTGCCCCAG
CCGCTGTTCG ACACGCAGTT GGCCGCGGGC TACCTGAACC TGGGCTTCTC CATGGGCTAT
TCGCGCCTGG TCCAGGAAGT GCTGGGCCTT GAGCTACCCA AGGGTGAAAC CCGCTCGGAC
TGGCTGCAGC GTCCGCTGTC GGACACCCAG GTCAGCTACG CCGCCGAAGA TGCCGTGCAC
CTGGCCGAAC TGTTTGCGGC CCTGCGCCCC CGGCTGTCCG ACGACAAGTA CGCGTGGGTG
CTGGAAGACG GTGCCGAACT GGTGGCGGCG TTGCGCCGTG AGGTCGAGCC CGAGACCCTG
TACCGCGATG TCAAGCTGGC CTGGAAGCTG GGCCGCCAGC AACTGGCGGT GCTCCGCGAG
CTGTGCGCCT GGCGCGAGCG TGAAGCACGC AGCCGCGATG TGCCGCGCAA CCGCATCCTC
AAGGAACACT CGCTGTGGCC AATGGCCAAG AACCAGCCGG ACAACCTGTC GGCCCTGGCC
AAGATCGATG AAATGCACCC ACGCACCATC CGCCAGGATG GCCCCTTCCT GATCGAGCTG
ATCAAGCGTG CTGCCAGCCT GCCGCCTGAG CAATGGCCGG CCACGTTGCC AGAACCACTG
CCGATCGAAG CGGCCGGCAT CCTCAAGCGC CTGCGCGCCA TCGGCCAGGC CGAAGGCGAG
CGCTTGGGCA TTGCCCCGGA GCTGATGCTG CGCAAAAAGG CCCTGGAAGC CCTGCTCAAG
AGCGGCTACC CCAATGGCCC CTATCAACTG CCCGATTCGC TGCGCGGCTG GCGCCGTGAG
CGGATGGGCC AGGCCCTGCT GGACGACCTG GCGGGCGCCG GAGAAACCCG ATGA
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| Protein sequence | MAIEIHWIRD DQTLAELCQR WRTLPFVALD TEFMRVDTFY PKAGLIQIGD GERAYLIDPL
LIVDWQPLGE LLEDAGVVKV LHACSEDLEV LLRLTGKLPQ PLFDTQLAAG YLNLGFSMGY
SRLVQEVLGL ELPKGETRSD WLQRPLSDTQ VSYAAEDAVH LAELFAALRP RLSDDKYAWV
LEDGAELVAA LRREVEPETL YRDVKLAWKL GRQQLAVLRE LCAWREREAR SRDVPRNRIL
KEHSLWPMAK NQPDNLSALA KIDEMHPRTI RQDGPFLIEL IKRAASLPPE QWPATLPEPL
PIEAAGILKR LRAIGQAEGE RLGIAPELML RKKALEALLK SGYPNGPYQL PDSLRGWRRE
RMGQALLDDL AGAGETR
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