| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3881 |
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| Symbol | |
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| ID | 6112845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4315143 |
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| End bp | 4319303 |
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| Gene Length | 4161 bp |
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| Protein Length | 1386 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641623671 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001750731 |
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| Protein GI | 170723043 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGAAG CAGCACGCTG GGGCGACGAC ATCGAGCACA CCTCAGCCCT CACAGGGTTC
CTTGCCGGCG CGGTTGCAGG ACTGGCGCTG GTTGCAGCCG CATCGTTCAT GGTCTGTACG
GGCGGGCTGG GTGGTTTTCT GCTGCTCATG GTCGTTGGCC TGGGCGCCAG CGCCCTGCCC
GGCCTGGGCG AGGATTTCGG TTCGACCTTT GGCTCACCCA CAGGGCAGAT CGAGCAGCCC
GGTTGTTCCC CGAACGTTTT CATCAACGGC CGCAACGCTG CGCATGTCAC CGAAAGTACC
GCCGTGTGCG AGCAGCACCC AGCCCCCGTC CAGGTTGCCG AGGGGTCCAG CAACGTGTTC
ATCAATGGCG TCGCGGCGGC GCGCAAGGGT GACAAGCTGA CCTGTGGCGC CAGCATCGCA
GCCGGGTCGA ACAACGTGTT CATCGGCGGC GGCACGCAGC GCTACCTCAA GGTCAGTGAA
GAAGTGCCGG ACGAGCTGCG CGTCACCGTC GATGTGCTGA TGGTCGTGGC CTCCATGGGC
CGCTCAGTGT TCAACGTCGC GACCATGGGC CTGCAAGCAG GCCTCAAGGC CGCAGGCCCC
TGCGCCTTGC AGGTTGGGTT GACCATCGCC GGCAGCTACC TGGCAGGCCG CTACCTGATT
GGCCCTGCCG TGGAAAGGGC CATCGCTGGT TTTGTCGGCA ACCCGGTTGA CCTCACCCGC
GGGCGCAAGG TACTGGCCGA CGAAACCGAT TTCGTCATCC CCGGCCTCAT GCCCATCGAG
TGGTCACGTT TCTACGCCAG CGACCTCGAT ACCGGCAGCG TGCTCGGGCG CGGCTGGACC
TTGCCCTGGG AGCAGAGCCT GCGCCGCAAT GGGTGCTTCG TGTACCTCAA GGACAACCAA
GGGCGCAGTG TTCCTTTCGC CGATGTCGAG CCGGGCGAGC GCATCTACAA CCCACACGAG
CAGTTGACGC TGGTGCGCAC CCTGGGTGGC CATTACATCC TGCAGACGCT CGACAACCTG
TTTTTCTACT TCGGCGAAGT ACCCAACGAC AACCAGGAAG TGCCCCTGCA GCGCCTGGAA
AACGCGTTGG GCCACTACCT GCACTTCACC CACAACGCCG ACGGCTGCCT CACCGACATC
AGCGCACCAG GCGGCATACG GCTGCACCTG CACTATGAGG CCCCCTTTGG CCGACTGGCC
TCGGTCAAGC GCATCATTGC CGACGCAGCC GTCGAGACCT TGGTGCGTTA TCGCTACGAC
GACAAGGGGC AGCTCGCCCA GGTGACCAAC CGCAACGGCG ATACCACCCG CACGTTTGCC
TACACCGACG GCCTGATGTG CCACCACACC AATGCCCTTG GCCTGATCAG CGAGTACCTC
TGGCAAGTCA TCGATGGCCA ACCCCGGGTG GTCAAACATT CGACCACCGA CGGCGAACAC
TTCCATTTGC GCTACGACTT CGCTCAACGC ACCAGTTGGG CAACCGATGT GCTTGGCCGT
GAGCTGGAGA TTCACTACAA CGAAGACAAC CGCGTCATCG CCAGCCGGGA TTTCGGTGGC
GAACGTTACG CGATCGACTT CGATACATAC GGCAACATCA TCGGGTTAGC CTTGCCGGAT
GGCAATCGCC TCGCGCTCAA GTACGACGAC TTCGGCAGGC TGGTCGAGGA AACCGACCCA
CTTGGCCGCA AGATCAGCTA CAAGCACTAC CGCGCCACAC CACTGGTGAC TGAAACCCGC
TTCCCGAATG GCAGCGTGTG GAAAGCCCGC TACGACGACA AAGGCAACCT GCTCGCCGAT
ATCGACCCGC TTGGCAACAA GACCGAGTAC CTCAACAGCG ACGACGGTCT GCCGCACACG
ATCATCGATG CCAACTTCAA GTCCAGGTAT CTATGGTGGA ACGCTTACGC CCAGGTCGAG
CGCTTCGAGG ACTGTTCGGG CAAGAGCACC TATTACCGCT ACGACGAACG CCAGCACCTG
ATTGCCGTCA CCGACGCGCT GAACAACACC ACCACGCTGG AGCGCAAACC TGATGGCGAA
GTGCTGCGCA TCAATCACCC GGACGGCACG GCAGAATCCT TCACCTACAA CACCCTTGGC
CAAGTGCTGA CGCACACCGA CGGTAAAGGC CAGACCACGC GCCTGCAGCG CACCTCGCGT
GGCTTGCCGA GCAGCCGTCA GGATGCCAAA GGCGAATGGA TCCGCTATGA GTACGACAAG
GCTCTGCGCC TGACGGCGCT GGTCAACGAG AACAGCTCAG CCTATCGCTT TGCCTACGAT
GCCTCGGACC GCTTGATTGA AGAAGTGCGG GTCGACAACC TGACCCGACG CTTCAGCTAT
GACGCAGGCG GCCATCTGAT CCGGCTCGAT GAGATTGGAT ACGGTGAGAA TGGCGAGCGC
CCGGAGCGCA ATACGCTGTT CGAGCGCGAT GCGATTGGCC GGCTGATGGC CAAACTCAAC
CGTGATGCCC GTCAGGATTA TGCATACGAC GAGGTCGACC GGTTAGTGAG CATTCAGCGC
CGTCCGACCG GTATCGGCAA GCAACTCGGC ATCGCCGAGG AAAAGCTGGA GTACACCTAC
GACCTGCTGG GGCGCCTGAC CCAGGAACTC ACACCGCAAG GTGCGCTGGG TTATGAATAC
GACCCTCTCA GCAACCTGAC CACGCTGACC CTGCCGGATG GGCGCAAGGT CAACCACCTG
TACTACGGTA GCGGTCACCT GCACCAGTTG AACCTGGACG GCCAAGTCAT CAGCGACATG
GAGCGCGACG ACCTGCACCG CGAGGTGTAC CGCACCCAGG GCAAGCTCAC CAGTTGTTTC
GGTTACGACG CCATGGGGCG CAAGGCGTGG CAGTTTGCTT CGACATTGCC CGCTGACAAG
CTCTCGCAGG TTCATAACCC CGGTATCAAC ACCTCACTGT TGGTGGAGCA CGCCTACAAC
CCGATTCACC GTCGCTACCA GTACGATCCG GCGGGGGAAC TGGTACGCAC GCTGGACAAG
CTGCGCGGTG AGACCAAGTA CGAGTACGAA GCCAACGGCC AGTTGCACAG CCGCGATACC
GGGTCGTTGG TAGGCAGTGA AGAATTCCGC TATGACCCGG CAGCAAACCG GCTGGACTTC
AACGCGCGGC AGTTTGAGAA GGTCAAGGAC AACCGCATCA AGCGCTGGCA AAACCAAGAG
TACCGCTACG ACCCATGGGG CAACCTGATA GAGAAAAGCT CGGGGCACAG CAAGCTGCAG
AGCTTTAGCT ATGACTGCGA GAACCGGCTG GTGCGTGCTG AGACAGTGGT CGACGGCAAG
CTGGAAAGTA CGGGCGCTTA TCGCTATGAC AGCCTGGGCC GACGAGTGGC CAAAACCGCT
GAAATCCAAG GCGCGACGGA GCAGAAGCAT TTCCTCTGGC AAGGGTTGAG GATGCTGCGT
GAGGAGACGC CGGGGCAGAG CATTTTGTAT CTCTACGAGC CGGGGAGCTA TGCGCCGTTG
GCGCGGGTTG ATCAGGTGGA GGGTGAGGCC CACAAGGTCT ACTACTTCCA TACCGATCAG
ATTGGAACGC CCTTGGAGTT GAGCAATAGC GAGGGTGAGA TCGTTTGGCA GGCGACCTAT
CGCTCATGGG GTGCGATCGA GCATTTGGCC GTCAATGACG TCGAACAGCA TTTGCGGTTT
CAAGGGCAGT ACTCTGATTC AGAGACGGGA CTACACTACA ATACGTTCCG ATTCTATGCT
CCTGAATTGG GCCGTTTCAT TTCTCAGGAT CCAATAGGAT TGGATGGAGG TTTCAACCTC
TACCGCTATG CTCCAAATCC AACTGGCTGG ACTGATCCCA GGGGCTGGGA GTGCTGGAGC
ACTGCGCGAA AAAATTATTG GAAAGCAGAA GCAAAAGCAC CAACACAAAC ATACTCCCCT
GCCAACCTTG CTCGAATGGC GGAAGGTAAG GCTCCCCGGA TAACGGTTGA AGTGATTTCT
CGCAAGACTG ATAAGATCTC CATCAAGGAA TATAGTCTAG AGCTTCATCA CAATGCCATT
CCTCAGAGGG TAGGTGGTGA TGGCGTTCAT GAGTCACCGA ATATATTGGC GCTTACGCCA
TGGGAGCATG AGACCGTAGA TCAGTTTAGA CACGTCGGCG CAGACTTGAT TAGAGTTATC
AAAGGAGTAG ATGTATGGTG A
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| Protein sequence | MFEAARWGDD IEHTSALTGF LAGAVAGLAL VAAASFMVCT GGLGGFLLLM VVGLGASALP
GLGEDFGSTF GSPTGQIEQP GCSPNVFING RNAAHVTEST AVCEQHPAPV QVAEGSSNVF
INGVAAARKG DKLTCGASIA AGSNNVFIGG GTQRYLKVSE EVPDELRVTV DVLMVVASMG
RSVFNVATMG LQAGLKAAGP CALQVGLTIA GSYLAGRYLI GPAVERAIAG FVGNPVDLTR
GRKVLADETD FVIPGLMPIE WSRFYASDLD TGSVLGRGWT LPWEQSLRRN GCFVYLKDNQ
GRSVPFADVE PGERIYNPHE QLTLVRTLGG HYILQTLDNL FFYFGEVPND NQEVPLQRLE
NALGHYLHFT HNADGCLTDI SAPGGIRLHL HYEAPFGRLA SVKRIIADAA VETLVRYRYD
DKGQLAQVTN RNGDTTRTFA YTDGLMCHHT NALGLISEYL WQVIDGQPRV VKHSTTDGEH
FHLRYDFAQR TSWATDVLGR ELEIHYNEDN RVIASRDFGG ERYAIDFDTY GNIIGLALPD
GNRLALKYDD FGRLVEETDP LGRKISYKHY RATPLVTETR FPNGSVWKAR YDDKGNLLAD
IDPLGNKTEY LNSDDGLPHT IIDANFKSRY LWWNAYAQVE RFEDCSGKST YYRYDERQHL
IAVTDALNNT TTLERKPDGE VLRINHPDGT AESFTYNTLG QVLTHTDGKG QTTRLQRTSR
GLPSSRQDAK GEWIRYEYDK ALRLTALVNE NSSAYRFAYD ASDRLIEEVR VDNLTRRFSY
DAGGHLIRLD EIGYGENGER PERNTLFERD AIGRLMAKLN RDARQDYAYD EVDRLVSIQR
RPTGIGKQLG IAEEKLEYTY DLLGRLTQEL TPQGALGYEY DPLSNLTTLT LPDGRKVNHL
YYGSGHLHQL NLDGQVISDM ERDDLHREVY RTQGKLTSCF GYDAMGRKAW QFASTLPADK
LSQVHNPGIN TSLLVEHAYN PIHRRYQYDP AGELVRTLDK LRGETKYEYE ANGQLHSRDT
GSLVGSEEFR YDPAANRLDF NARQFEKVKD NRIKRWQNQE YRYDPWGNLI EKSSGHSKLQ
SFSYDCENRL VRAETVVDGK LESTGAYRYD SLGRRVAKTA EIQGATEQKH FLWQGLRMLR
EETPGQSILY LYEPGSYAPL ARVDQVEGEA HKVYYFHTDQ IGTPLELSNS EGEIVWQATY
RSWGAIEHLA VNDVEQHLRF QGQYSDSETG LHYNTFRFYA PELGRFISQD PIGLDGGFNL
YRYAPNPTGW TDPRGWECWS TARKNYWKAE AKAPTQTYSP ANLARMAEGK APRITVEVIS
RKTDKISIKE YSLELHHNAI PQRVGGDGVH ESPNILALTP WEHETVDQFR HVGADLIRVI
KGVDVW
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