| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3848 |
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| Symbol | |
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| ID | 6112812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4285972 |
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| End bp | 4287210 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641623638 |
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| Product | RNA polymerase ECF-subfamily sigma factor |
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| Protein accession | YP_001750698 |
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| Protein GI | 170723010 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACGC TGGTGCAGGT ACGCGCCGAG ATCGAGGGGG TTTACCGCCG GGACTCGCGG
CGTATCCTGG CGACGCTAAT CCGCCTGCTG GGGGATTTCG ACCTGGCAGA GGAGGCCATG
CATGATGCCT TCTTCATTGC CGTCGAGCGC TGGCAGCGCG ACGGTATCCC CCAAAATCCA
CGTGCATGGC TGGTGTCGAC CGGCCGTTTC AAGGCCATTG ACGCGGTGCG GCGCCGTGCG
CGTTTCGACC GTTCGCAGGC TGACCTGATC ATGCTCATCG AGGGCCAGGG GCAAGACCCC
AGTGATGAGG AGTTGCTCGC CGACGATCGC CTGCGGCTGA TCTTCACGTG CTGCCACCCG
GCTCTGGCTG CCGATGCGCA GGTGCCTTTG ACGTTGCGCG AAGTCTGTGA CCTGACCACT
GAGCAGATCG CCCGTGCCTT CCTGCAGAGC CCGGCGGCCA TTGCCCAACG CATTGTGCGC
GCCAAGGCCA AGATCCGCGA CGCACGCATT CCTTATCAGG TGCCGGAGCT GCACGAATTG
CCTGAGCGCC TGGAAAGCGT GTTGCGGGTG ATTTACCTGG TGTTCAACGA GGGCTATTCG
GCGTCTTCTG GTGAGGCTTT GGTACAGCAG GCGTTGAGTG ACGAAGCGAT TCGCCTCGGT
CGCTTGCTGG TGCAGTTGTT ACCGGACCCG GAGGCGGTCG GTTTGCTGGC GCTGATGTTG
CTGCAGGCGT CACGCCAGCA CGCGCGTAGC GATGCCCAAG GCAATCTGGT GCTGCTCGAG
CAGCAGGATC GCAGCCTGTG GGACGGTGCG CAAATCAGCG AAGGTTGTGA ATTGGTGCAG
CTGGCGTTGC GCAGCCGCGC GTTCGGTGCC TATACGGTGC AGGCGGCGAT TGCAGCGGTG
CATGCGGAGG CGGCGAGCGC CAGTGAAACG GACTGGGCGC AGATTGTCGG CCTTTACGAT
GTGCTGCAGC GGCATTGGCC ATCCGCAGTG GTTGCACTCA ACCGAGCGGT GGCATTGGCC
AAGCGGGATG GCCCGCAGGT CGGGTTGGCG CAGGTTGAAA CAATTCTGGC GACTGGCGAG
TTGCGCGACT ATCACCTGGC GCATGCGGCA AGGGCGGAGC TGCATTACCA GTTGGGTCAG
ATAGAAGAGG CCCGTGCGGC CTGGCGCCAG GCGCTGGAGT TGACGCGTCA GGCGCCGGAA
CGGCGGCATA TCGAGGGAAA GCTGCAGGCG TTGGAATGA
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| Protein sequence | MATLVQVRAE IEGVYRRDSR RILATLIRLL GDFDLAEEAM HDAFFIAVER WQRDGIPQNP
RAWLVSTGRF KAIDAVRRRA RFDRSQADLI MLIEGQGQDP SDEELLADDR LRLIFTCCHP
ALAADAQVPL TLREVCDLTT EQIARAFLQS PAAIAQRIVR AKAKIRDARI PYQVPELHEL
PERLESVLRV IYLVFNEGYS ASSGEALVQQ ALSDEAIRLG RLLVQLLPDP EAVGLLALML
LQASRQHARS DAQGNLVLLE QQDRSLWDGA QISEGCELVQ LALRSRAFGA YTVQAAIAAV
HAEAASASET DWAQIVGLYD VLQRHWPSAV VALNRAVALA KRDGPQVGLA QVETILATGE
LRDYHLAHAA RAELHYQLGQ IEEARAAWRQ ALELTRQAPE RRHIEGKLQA LE
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