| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3828 |
|---|
| Symbol | |
|---|
| ID | 6112792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 4260573 |
|---|
| End bp | 4261874 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641623618 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001750678 |
|---|
| Protein GI | 170722990 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0280894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.277572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATGC AAAAAATCTG GCGCGACAGC CTCGACCTGT GGGGCACCCT TGACCAACAC
CCCATGCTCC ACGCCGCCAT CGGCCTGGCC GTGCTGCTGC TGGTTTCCCT GGTAATCGGC
CGCCTGGCGC GCTTTCTGAT CCTGCACGGC ACACGCTTGC TGGCCCGCCA GCCTGCGCTC
AAATGGCTCG ACGACCTGCG CCACAACAAG GTGTTTCACC GCCTGGCGCA GACCACACCG
TCGCTGGTCA TCCAGTTCGG GCTGAAACTG GTACCGGAGC TGTCCGATAC CGCCCAGCAC
TTCCTTGGCA ATATGGCGCT GGCCTTTACC CTGCTGTTCA TGACCCTGGC GCTGTCGTGC
CTGCTCGATG GCCTGCTCGA CATCTACGCC CGCACCGAAC ATGCCCGCAC CCGCTCGATC
AAGGGCTATG TGCAACTGGC GAAGATGATG CTGTGGATTT TCGCCTCCAT CGTCATCGTC
GCCACCCTGA TCGACCGTTC ACCCCTGTTG CTGCTGTCAG GCCTGGGTGC GATGTCGGCA
GTATTGCTGT TGGTGTACAA GGACACCCTG TTGTCGTTCG TCGCCAGCGT GCAGCTCACC
AGTAACGACA TGCTGCACGT CGGCGACTGG ATCGAAATGC CCCAGGTCGG CGCCGATGGC
GATGTGGTCG ATATCACCCT GCACACGGTT AAGGTGCAGA ACTTCGACAA GACCATTGTC
TCGATCCCCA CCTGGCGGCT GATGAGCGAG TCGTTCCGCA ACTACCGCGG CATGCAGCAA
TCGGGCGGCC GGCGGATCAA ACGCAGCCTG TTCATCGATG CGGCGGGCGT GCGTTTTCTG
ACCCGAGAAG AAGAACAGCG CCTGAGCGGG GTGCGCCTGC TCGCTGACTA CCTGGCCGGC
AAGCGCCAGG AGCTCCATGA ATGGAACGAA GCTCTGGGGC CGGTGGCCGA GCTGTCGGCC
AACCGCCGCC AGCTGACCAA CATCGGCACC TTCCGCGCCT TTGCCCTGGC TTACCTGAGG
AACCACCCCA ACGTGCACCA AGGCATGACC TGCATGGTCC GGCAGATGCA GACCGGCGCC
GAGGGGGTGC CGCTGGAGAT CTACTGCTTC ACCACCACGA CCGTGTGGGC CGAGTACGAA
CGGATCCAGG GCGATATCTT CGATTACTTG CTGGCGGTGT TGCCGGAGTT TGGGCTGAGC
TTGTATCAGC AGCCGAGTGG CAATGACATG CGCGTGGGGC TGGCGGGGCG CGTTTCGGTA
GAGCCTGTGC CACGTCGCCT GGAAGAAATG AGCGAGGCTT GA
|
|---|
| Protein sequence | MDMQKIWRDS LDLWGTLDQH PMLHAAIGLA VLLLVSLVIG RLARFLILHG TRLLARQPAL
KWLDDLRHNK VFHRLAQTTP SLVIQFGLKL VPELSDTAQH FLGNMALAFT LLFMTLALSC
LLDGLLDIYA RTEHARTRSI KGYVQLAKMM LWIFASIVIV ATLIDRSPLL LLSGLGAMSA
VLLLVYKDTL LSFVASVQLT SNDMLHVGDW IEMPQVGADG DVVDITLHTV KVQNFDKTIV
SIPTWRLMSE SFRNYRGMQQ SGGRRIKRSL FIDAAGVRFL TREEEQRLSG VRLLADYLAG
KRQELHEWNE ALGPVAELSA NRRQLTNIGT FRAFALAYLR NHPNVHQGMT CMVRQMQTGA
EGVPLEIYCF TTTTVWAEYE RIQGDIFDYL LAVLPEFGLS LYQQPSGNDM RVGLAGRVSV
EPVPRRLEEM SEA
|
|---|
| |