| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3818 |
|---|
| Symbol | |
|---|
| ID | 6112782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4252126 |
|---|
| End bp | 4253019 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641623609 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001750669 |
|---|
| Protein GI | 170722981 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.493989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.173651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTCA GCCAGCTGCG CATCTTCCAG GCGGTCGCAG AGGAAGGTTC CATCACGCGC
GCCGCCGAGC GCCTGCACCG GGTGCCGTCG AACCTGTCCA CACGCTTGCG CCAGCTTGAA
GAGCAACTGG GCGTAGAGCT TTTCTTGCGT GAACGCCAGC GCCTGCAGTT GTCCCCCGCT
GGCAAGGTGC TGCTGGATTA CGCCAACCGC CTGGCGGCGC TGCGTGACGA AGCCATGGCG
GCGGTACAGG GTGGGCAGCC GGCCGGCGAC TTCGTCCTGG GCACCATGTA CAGCACGGCG
GCCATTCACC TGCCAGCGCT GTTGGCGCGC TACCATCAGG CCTATCCGGC CGTTAACTTG
CAGGTGCAGG CTGCCCCCAG TGGCGAGTTG CTCGAGGGGT TGCTCAGCCA CCGCCTGGAC
GCCGCACTGG TGGACGGGCC TCCGAGCCTG GCGGGGCTCG ATGGCGTGCC CTTTTGCGAA
GAAGAACTGG TACTGATCAC CAGCCCTGAA CACCCAACAG TGCACAGCGC CAGGGATGTC
GCGGGCAAGG CGGTGTTCAC CTTCCGCCAG GGCTGCTCCT ACCGGATGCG CCTGGAGGCC
TGGTATGCCC ATGCACATAC GCCCACGGGG CGGGTAATGG AGATCGAGTC TTACCAGAGC
ATGCTGGCTT GTGTGATAGC CGGTGCGGGC GTCGCTTTGA TGGCGCAATC TATGCTCGAC
AGCCTGCCGG GGCGTGACCG CGTTCAGGTC CATCGCCTGC AGGCGCCGTT CGATCAGGCG
GTGACCTGGC TGATGTGGCG GCAGGGGATG CGAGGGGCGA ATTTGCAGGC GTGGGTCGAT
TTGCAACAAA GCGAAACGAT TAGCCAGCCG TCGGAATCCA CCGTTTCCGC TTGA
|
|---|
| Protein sequence | MEFSQLRIFQ AVAEEGSITR AAERLHRVPS NLSTRLRQLE EQLGVELFLR ERQRLQLSPA
GKVLLDYANR LAALRDEAMA AVQGGQPAGD FVLGTMYSTA AIHLPALLAR YHQAYPAVNL
QVQAAPSGEL LEGLLSHRLD AALVDGPPSL AGLDGVPFCE EELVLITSPE HPTVHSARDV
AGKAVFTFRQ GCSYRMRLEA WYAHAHTPTG RVMEIESYQS MLACVIAGAG VALMAQSMLD
SLPGRDRVQV HRLQAPFDQA VTWLMWRQGM RGANLQAWVD LQQSETISQP SESTVSA
|
|---|
| |