| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3809 |
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| Symbol | |
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| ID | 6112773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 4240624 |
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| End bp | 4241997 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641623600 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001750660 |
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| Protein GI | 170722972 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0041623 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCGTGT TCAACCCCAT CACCAGTGCA ATTCTGTTGG CCATGGCGTG CGCCAACGTT
CAGGCGATGT CGCTCACCGA GGCTGTCCAG AGCGCTGTGG ACTACCACCC GGAAATAAGC
TCCAACCGTA ACAGCAGGTT GTCAGCCGAC GAGGACGTGA AATTTGCCCG TGGTGGGTAC
TATCCAACCG TCGACCTGGT AGCCGGGTAC GGCAGACAGC GCTCGGACAA CCTCAACACC
CGCGGCCTGA ACGCTGACGG TACCCGCAAC CACAACAAGG AAACCCTGAA CTACACCCAG
TCCGAACTGC GTCTTCGGCA AATGATCTTC GATGGTTTCA ACACAGCCAA CGAAGTGGGC
CGTACCGAGG CGGTGGCCAC CTCCCGCGCC TACTACACTC AGGCCGTCGC CCAAGATGTC
GCCCTGCGAG CCATCGAGGT GTACCTGGAA GTGCTGAAAC GCCGAGAGTT GGTGACCCTG
GCAAAGAACA ACCTGCAGGC GCACCTGCGC GTCAGCGATC AGATAGGCCT GCGTAGCGAG
CGGGGCGTAG GCAGCACCGC CGACCTTGAC CAATCCCGCG CACGCCGGGC TCTGGCGGAA
AACAATCTGG ACACCGCCGA GGTCGACCTG GCCGATGCCG AGGCCAACTT CTACAGCGTG
GTCGGCCGCC TGCCGGATGA GCTGGAAGGC CCGCAATCGG TCAAGGTGGA AATGCCGGGC
ACTCTGGACG AGGCGCGCGA AGGCATGCGC CAGAACAATC CCTACCTGAA ATCTGCACAG
GCCGACGTCA ATGCCGCCGA GCAGCAGTAC GAAGTGGCCA AGTCGCCCTT CTACCCACGC
CTGGACGCGG TGCTGGCCAC CGGCGCCAAC AACAACCTCG GTGGCGAAAA AGGCCACAGC
AACAACGACT GGCAGGCCGG CGTCGAACTC AGCTACAACC TGTTCCGCGG CGGCAGCGAC
AAAGCCCGCC TGCAGTCCGA CGCGCACAAG ATCAACCAGG CACTGGACAT CCGCAACAAC
GCGCTGCGCG AGCTGACCGA AAACCTCAGC CTGGCCTGGA ACGCGATGAA CAACGCCCGT
AAACAGACCC CTACCGCCCG TGAGTACGCA GAAACGACGC AACGTGTGCG CGCCGCCTAT
CAGGACCAGT TCGGCCTGGG CCAACGCACC CTGCTCGATG TGCTGGACAG CGAGAATGAG
CTGTACAACG CCAACCGCCG TTACACCGAG GTGCGTTACA CCGAGGAGTA TTCGATGTAT
CGCGTGCTGG CGACCATGGG TGAGCTGCTG AGCAAACAGC GTATTTCACT GCCGCCAGAG
GCCATCGCCA ACAACGACGT ACGCACCGAG GCCAGGTTGC CCGACATGCG TTGA
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| Protein sequence | MRVFNPITSA ILLAMACANV QAMSLTEAVQ SAVDYHPEIS SNRNSRLSAD EDVKFARGGY
YPTVDLVAGY GRQRSDNLNT RGLNADGTRN HNKETLNYTQ SELRLRQMIF DGFNTANEVG
RTEAVATSRA YYTQAVAQDV ALRAIEVYLE VLKRRELVTL AKNNLQAHLR VSDQIGLRSE
RGVGSTADLD QSRARRALAE NNLDTAEVDL ADAEANFYSV VGRLPDELEG PQSVKVEMPG
TLDEAREGMR QNNPYLKSAQ ADVNAAEQQY EVAKSPFYPR LDAVLATGAN NNLGGEKGHS
NNDWQAGVEL SYNLFRGGSD KARLQSDAHK INQALDIRNN ALRELTENLS LAWNAMNNAR
KQTPTAREYA ETTQRVRAAY QDQFGLGQRT LLDVLDSENE LYNANRRYTE VRYTEEYSMY
RVLATMGELL SKQRISLPPE AIANNDVRTE ARLPDMR
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