| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3785 |
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| Symbol | |
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| ID | 6112749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 4211369 |
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| End bp | 4212433 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641623576 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001750636 |
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| Protein GI | 170722948 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000422758 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGAGC AAGACCTGCA AAATACCGAA ATCACCCCGC CAGCCGGCGA AAAACTGCAG
AAAGTGCTGG CGCGCATCGG CGTGGGCTCG CGCCGTGACG TCGAAGCCTG GATCAGCCAG
GGCCGCATCA AGGTCAATGG CGTCGAGGCC ACCCTCGGCC AGCGCGTCGA CCTTCACGAT
GCCATCGCTG TCGACGGCAA GCTGATCAAG CGCGAAGAGG CCGCCGAGGC CACGCGCCGA
GTGATCATGT ATAACAAGCC CGATGGCGAG ATCTGCACCC GTGACGACCC GGAAGGTCGC
CCGACCGTGT TCGACCGCCT GCCGCGGCCG AAAGAAGGCC GCTGGATCAA CATTGGCCGA
CTGGACATCA ATACCACCGG TCTGCTGCTG TTCACCACCG ACGGTGAACT GGCCAACCGC
CTGATGCACC CGTCCTACGA GATGGACCGC GAATACGCGG TGCGTGTCCG TGGCGAAGTC
GACGACGAGA TGATCGAACG CCTGAAGGCG GGCGTGATGC TTGAAGACGG CCCGGCCAAG
TTCACCGACA TCCAGAAGGC CCCAGGTGGT GAAGGTTTCA ACCACTGGTA CCACTGCGTG
GTGATGGAAG GTCGTAACCG TGAGGTGCGC CGCCTGTGGG AATCCCAGGG TATGGTGGTC
AGCCGCCTCA AGCGCGTGCG TTTTGGCCCG GTGTTCCTCA ACTCCGATCT GCCGATGGGT
CGCTGGCGTG AAATGACCCA GGGTGAAATC GACATCCTGG CCGCTGAAGT GGGCCTGCAG
CCGGTGGCGC TGCCTGCCAT GAACCTCAAG GCCAAAGACA AGATGGAGCG CCTGCAGCGC
AAGTCGACCC GGCCCATGGG GCGTAGCGAG CGCGTGCGCA GCCTGCGCCC GGCGCAGGAA
GCCGCAGCTG CCGAGCGTCC GGCTCGCCAG CCGCGTGAAG AAGCGCCACG CAAAGGCAGC
CGCGGCAGTG CGGTGGCTGA GCGTCCAAGC GAGATGCGCA AGCGCCCGGC CAAGACCGAC
GGTGACAAGC CGGCAGGGCG TGGTCGCGGC AAGCCGCGTG GCTGA
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| Protein sequence | MSEQDLQNTE ITPPAGEKLQ KVLARIGVGS RRDVEAWISQ GRIKVNGVEA TLGQRVDLHD
AIAVDGKLIK REEAAEATRR VIMYNKPDGE ICTRDDPEGR PTVFDRLPRP KEGRWINIGR
LDINTTGLLL FTTDGELANR LMHPSYEMDR EYAVRVRGEV DDEMIERLKA GVMLEDGPAK
FTDIQKAPGG EGFNHWYHCV VMEGRNREVR RLWESQGMVV SRLKRVRFGP VFLNSDLPMG
RWREMTQGEI DILAAEVGLQ PVALPAMNLK AKDKMERLQR KSTRPMGRSE RVRSLRPAQE
AAAAERPARQ PREEAPRKGS RGSAVAERPS EMRKRPAKTD GDKPAGRGRG KPRG
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