| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_3784 |
|---|
| Symbol | |
|---|
| ID | 6112748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 4209312 |
|---|
| End bp | 4210733 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641623575 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001750635 |
|---|
| Protein GI | 170722947 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0000046446 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAC ACAACATGCA TTCAGGCGAG CTCAAGCGGG GCCTGAAGAA CCGCCACATC
CAGTTGATCG CCCTTGGCGG CGCGATTGGT ACCGGCCTGT TCCTTGGCTC GGCAGGCGTG
ATGAAATCCG CCGGCCCGTC GATGATCCTG GGCTACGCCA TCTGCGGCTT CATCGCCTTC
ATGATCATGC GCCAGCTTGG TGAGATGATC GTCGAAGAGC CGGTGGCCGG TTCGTTCAGC
CACTTTGCCC ATAAGTACTG GGGCGGTTTT GCCGGTTTCA TGTCGGGCTG GAACTGCTGG
GTGCTGTACA TCCTGGTGGG CATGTCGGAG CTGACGGCGG TCGGCAAGTA CATTCACTAC
TGGTGGCCGG AGATCCCGAC GTGGGTTACG GCAGCGGGCT TCTTCCTGCT GATCAACGTC
ATCAACCTCA TGAACGTGAA GGTGTTCGGC GAAGCCGAGT TCTGGTTCGC CATCATCAAG
GTCGCGGCCA TCGTCGGCAT GATCGGCCTG GGCGCCTACC TACTGACCAG CGGCAGCGGC
GGCCCCGAGG CTTCGGTGAC CAACCTGTGG GCTCATGGGG GCTTCTTCCC GCATGGTGTC
AGCGGCCTGG TCATGGCGCT GGCGTTCATC ATGTTCTCCT TCGGGGGCCT GGAAATGCTC
GGCTTCACTG CAGCCGAAGC AGATAAGCCG AAAACCGTGA TCCCCAAGGC CATCAACCAG
GTCATCTACC GCATCCTGAT CTTCTACATC GGTGCGCTGG TCGTGCTGTT GTCGCTGACC
CCGTGGGACA GCCTGGTGGC CAGCATCGAT GCTTCTGGCG GCAGCTACGG TAGCAGCCCG
TTCGTTCAGG TGTTCTCGCT GTTGGGCAGC GACGTGGCCG CCCACCTGTT GAACTTCGTG
GTCCTGACGG CGGCACTGTC GGTGTACAAC AGTGGTACCT ACTGCAATGC CCGCATGCTG
CTTGGCATGG CCGAGCAAGG TGATGCCCCC GCAGCCCTGG CCAAAGTCGA CAAGCGCGGC
GTGCCGGTGC GTTCGATCCT GGTGTCGGCA GCCGTTACCC TGATTGCCGT GCTGCTCAAC
TACTTCATGC CGCATAATGC GCTGGAGCTG CTGATGTCGC TGGTAGTAGC GACCCTGGTG
ATCAACTGGG CAATGATCAG TTACTCGCAC CTGAAATTCC GCCAGCACCT GGACCGCACC
GGCCAGAAGC CGCTGTTCAA GGCCCTGTGG TACCCCTACG GCAACTACAT CTGCCTGGCA
TTCGTGGTAC TGATCCTGGG CATCATGCTG CAGATCCCGG GCATCCAGGT TTCGGTGTAT
GCCATTCCGG TCTGGGTGCT GATGATGTTC GTCTTCTATA TCATCAAGTC CAAGCGTCGT
GAGCTGGGCA ATGGCGCAGC AGCCGGCACC GTTACCAAGT AA
|
|---|
| Protein sequence | MSEHNMHSGE LKRGLKNRHI QLIALGGAIG TGLFLGSAGV MKSAGPSMIL GYAICGFIAF
MIMRQLGEMI VEEPVAGSFS HFAHKYWGGF AGFMSGWNCW VLYILVGMSE LTAVGKYIHY
WWPEIPTWVT AAGFFLLINV INLMNVKVFG EAEFWFAIIK VAAIVGMIGL GAYLLTSGSG
GPEASVTNLW AHGGFFPHGV SGLVMALAFI MFSFGGLEML GFTAAEADKP KTVIPKAINQ
VIYRILIFYI GALVVLLSLT PWDSLVASID ASGGSYGSSP FVQVFSLLGS DVAAHLLNFV
VLTAALSVYN SGTYCNARML LGMAEQGDAP AALAKVDKRG VPVRSILVSA AVTLIAVLLN
YFMPHNALEL LMSLVVATLV INWAMISYSH LKFRQHLDRT GQKPLFKALW YPYGNYICLA
FVVLILGIML QIPGIQVSVY AIPVWVLMMF VFYIIKSKRR ELGNGAAAGT VTK
|
|---|
| |